{ "type": "genome", "identifier": "GCF_003596405.1", "organism": "Pseudomonas cavernicola", "title": "Pseudomonas cavernicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003596405.1", "bioproject": "PRJNA224116", "biosample": "SAMN10055711", "wgs_master": "QYUR00000000.1", "refseq_category": "reference genome", "taxid": "2320866", "species_taxid": "2320866", "organism_name": "Pseudomonas cavernicola", "infraspecific_name": "strain=K1S02-6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/24", "asm_name": "ASM359640v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003596405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/596/405/GCF_003596405.1_ASM359640v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5626424", "genome_size_ungapped": "5626424", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003596405.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "5236", "protein_coding_gene_count": "4856", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-24", "dateModified": "2018-09-24", "datePublished": "2018-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas cavernicola" ], "sample_taxid": [ "2320866" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "1.573 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5626424", "Number of Sequences": "8", "Longest Sequences (bp)": "2980139", "N50 (bp)": "2980139", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "5179", "Average Protein Length": "305.1", "Coding Ratio (%)": "84.3", "Number of rRNAs": "20", "Number of tRNAs": "77", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas cavernicola", "strain": "strain=K1S02-6", "accession": "GCA_003596405.1", "taxid": 2320866, "species_taxid": 2320866, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1862, "total_fragments": 1872, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 82.7418, "matched_fragments": 1105, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 81.9703, "matched_fragments": 1050, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 81.6219, "matched_fragments": 916, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 81.5595, "matched_fragments": 968, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 81.5486, "matched_fragments": 912, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 81.5149, "matched_fragments": 904, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 2759166, "relation_to_type": "type", "validated": true, "ani": 81.3154, "matched_fragments": 862, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 80.904, "matched_fragments": 853, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=NBRC 3521", "accession": "GCA_000813225.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 80.7245, "matched_fragments": 855, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_900560965.1", "taxid": 380021, "species_taxid": 380021, "relation_to_type": "type", "validated": true, "ani": 80.5927, "matched_fragments": 810, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas composti", "strain": "strain=CCUG 59231", "accession": "GCA_900115475.1", "taxid": 658457, "species_taxid": 658457, "relation_to_type": "type", "validated": true, "ani": 80.5804, "matched_fragments": 823, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_000397205.1", "taxid": 380021, "species_taxid": 380021, "relation_to_type": "type", "validated": true, "ani": 80.509, "matched_fragments": 810, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas otitidis", "strain": "strain=DSM 17224", "accession": "GCA_900111835.1", "taxid": 319939, 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"type", "validated": true, "ani": 80.2637, "matched_fragments": 642, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1365, "matched_fragments": 827, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yamanorum", "strain": "strain=LMG 27247", "accession": "GCA_900105735.1", "taxid": 515393, "species_taxid": 515393, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0596, "matched_fragments": 732, "total_fragments": 1872, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tehranensis", "strain": "strain=SWRI196", "accession": "GCA_014268615.1", "taxid": 2745502, "species_taxid": 2745502, "relation_to_type": "type", "validated": true, "ani": 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