{ "type": "genome", "identifier": "GCF_003597125.1", "organism": "Alcanivorax profundi", "title": "Alcanivorax profundi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003597125.1", "bioproject": "PRJNA224116", "biosample": "SAMN10058827", "wgs_master": "QYYA00000000.1", "refseq_category": "reference genome", "taxid": "2338368", "species_taxid": "2338368", "organism_name": "Alcanivorax profundi", "infraspecific_name": "strain=MTEO17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/24", "asm_name": "ASM359712v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_003597125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/597/125/GCF_003597125.1_ASM359712v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3737376", "genome_size_ungapped": "3737376", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "227", "contig_count": "227", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003597125.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "3384", "protein_coding_gene_count": "3316", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-24", "dateModified": "2018-09-24", "datePublished": "2018-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax profundi" ], "sample_taxid": [ "2338368" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana Trench" ], "sample_host_location_id": [], "data_size": "1.062 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3737376", "Number of Sequences": "227", "Longest Sequences (bp)": "1153483", "N50 (bp)": "998536", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "3334", "Average Protein Length": "322.1", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1200, "total_fragments": 1200, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 82.2675, "matched_fragments": 721, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 81.7225, "matched_fragments": 703, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 80.9051, "matched_fragments": 688, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax 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"GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 78.5564, "matched_fragments": 333, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 78.5163, "matched_fragments": 381, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.6854, "matched_fragments": 228, "total_fragments": 1200, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, 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