{ "type": "genome", "identifier": "GCF_003598715.1", "organism": "Nocardia panacis", "title": "Nocardia panacis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003598715.1", "bioproject": "PRJNA224116", "biosample": "SAMN10089539", "wgs_master": "QZFU00000000.1", "refseq_category": "reference genome", "taxid": "2340916", "species_taxid": "2340916", "organism_name": "Nocardia panacis", "infraspecific_name": "strain=YIM PH 21724", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/26", "asm_name": "ASM359871v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_003598715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/598/715/GCF_003598715.1_ASM359871v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7362956", "genome_size_ungapped": "7362377", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003598715.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "6880", "protein_coding_gene_count": "6707", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-26", "dateModified": "2018-09-26", "datePublished": "2018-09-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia panacis" ], "sample_taxid": [ "2340916" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], 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"accession": "GCA_900156775.1", "taxid": 37329, "species_taxid": 37329, "relation_to_type": "type", "validated": true, "ani": 80.7305, "matched_fragments": 1012, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia xishanensis", "strain": "strain=NBRC 101358", "accession": "GCA_001613365.1", "taxid": 238964, "species_taxid": 238964, "relation_to_type": "type", "validated": true, "ani": 80.7092, "matched_fragments": 1092, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia beijingensis", "strain": "strain=NBRC 16342", "accession": "GCA_001612785.1", "taxid": 95162, "species_taxid": 95162, "relation_to_type": "type", "validated": true, "ani": 80.601, "matched_fragments": 1073, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia cyriacigeorgica", "strain": "strain=DSM 44484", "accession": "GCA_005863225.1", "taxid": 135487, 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896, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 80.0747, "matched_fragments": 918, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia rhizosphaerihabitans", "strain": "strain=CGMCC 4.7329", "accession": "GCA_014646295.1", "taxid": 1691570, "species_taxid": 1691570, "relation_to_type": "type", "validated": true, "ani": 80.0047, "matched_fragments": 1000, "total_fragments": 2422, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003598715.1", "gtdb_species": "s__Nocardia panacis", "ani": 100.0, "matched_fragments": 2418, "total_fragments": 2422, "gtdb_taxonomy": 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