{ "type": "genome", "identifier": "GCF_003600645.1", "organism": "Yersinia rochesterensis", "title": "Yersinia rochesterensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mayo Clinic", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003600645.1", "bioproject": "PRJNA224116", "biosample": "SAMN09765716", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1604335", "species_taxid": "1604335", "organism_name": "Yersinia rochesterensis", "infraspecific_name": "strain=ATCC BAA-2637", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/27", "asm_name": "ASM360064v1", "asm_submitter": "Mayo Clinic", "gbrs_paired_asm": "GCA_003600645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/600/645/GCF_003600645.1_ASM360064v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4448883", "genome_size_ungapped": "4448583", "gc_percent": "47.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003600645.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "4026", "protein_coding_gene_count": "3817", "non_coding_gene_count": "125", "pubmed_id": "31135335;33406034" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-27", "dateModified": "2018-09-27", "datePublished": "2018-09-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia rochesterensis" ], "sample_taxid": [ "1604335" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "diarrhea" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Rochester, MN" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4448583", "Number of Sequences": "3", "Longest Sequences (bp)": "4437953", "N50 (bp)": "4437953", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.5", "Number of CDSs": "3882", "Average Protein Length": "323.6", "Coding Ratio (%)": "84.7", "Number of rRNAs": "22", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia rochesterensis", "strain": "strain=ATCC BAA-2637", "accession": "GCA_003600645.1", "taxid": 1604335, "species_taxid": 1604335, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1479, "total_fragments": 1482, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Yersinia thracica", "strain": "strain=IP34646", "accession": "GCA_902170565.1", "taxid": 2890319, "species_taxid": 2890319, "relation_to_type": "type", "validated": true, "ani": 95.0119, "matched_fragments": 1216, "total_fragments": 1482, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Yersinia kristensenii", "strain": "strain=NCTC11471", "accession": "GCA_900460525.1", "taxid": 28152, "species_taxid": 28152, "relation_to_type": "type", "validated": true, "ani": 93.0058, "matched_fragments": 1295, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia kristensenii", "strain": "strain=ATCC 33638", "accession": "GCA_000173715.1", "taxid": 28152, "species_taxid": 28152, "relation_to_type": "type", "validated": true, "ani": 92.8602, "matched_fragments": 1267, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica", "strain": "strain=ATCC 9610", "accession": "GCA_000755055.1", "taxid": 630, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.1912, "matched_fragments": 1184, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NCTC12982", "accession": "GCA_901472495.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.1481, "matched_fragments": 1189, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. palearctica", "strain": "strain=Y11", "accession": "GCA_000253175.1", "taxid": 150053, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.1356, "matched_fragments": 1188, "total_fragments": 1482, "ani_threshold": 95, "status": 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"strain": "strain=CFS1934", "accession": "GCA_004124235.1", "taxid": 2339259, "species_taxid": 2339259, "relation_to_type": "type", "validated": true, "ani": 86.8091, "matched_fragments": 1201, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia alsatica", "strain": "strain=IP38850", "accession": "GCA_902170305.1", "taxid": 2890317, "species_taxid": 2890317, "relation_to_type": "type", "validated": true, "ani": 85.4578, "matched_fragments": 1184, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 29483, "relation_to_type": "type", "validated": true, "ani": 84.6174, "matched_fragments": 982, "total_fragments": 1482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, 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