{ "type": "genome", "identifier": "GCF_003600895.1", "organism": "Nocardioides cavernaquae", "title": "Nocardioides cavernaquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003600895.1", "bioproject": "PRJNA224116", "biosample": "SAMN10059058", "wgs_master": "QYRP00000000.1", "refseq_category": "reference genome", "taxid": "2321396", "species_taxid": "2321396", "organism_name": "Nocardioides cavernaquae", "infraspecific_name": "strain=K1W22B-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/28", "asm_name": "ASM360089v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003600895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/600/895/GCF_003600895.1_ASM360089v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3466964", "genome_size_ungapped": "3466964", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003600895.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "3377", "protein_coding_gene_count": "3313", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-28", "dateModified": "2018-09-28", "datePublished": "2018-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides cavernaquae" ], "sample_taxid": [ "2321396" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3466964", "Number of Sequences": "2", "Longest Sequences (bp)": "3455001", "N50 (bp)": "3455001", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.4", "Number of CDSs": "3334", "Average Protein Length": "323.3", "Coding Ratio (%)": "93.3", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides cavernaquae", "strain": "strain=K1W22B-1", "accession": "GCA_003600895.1", "taxid": 2321396, "species_taxid": 2321396, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1152, "total_fragments": 1154, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardioides phosphati", "strain": "strain=CGMCC 4.7371", "accession": "GCA_014646375.1", "taxid": 1867775, "species_taxid": 1867775, "relation_to_type": "type", "validated": true, "ani": 83.2494, "matched_fragments": 732, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides jejuensis", "strain": "strain=18JY15-6", "accession": "GCA_004337475.1", "taxid": 2502782, "species_taxid": 2502782, "relation_to_type": "type", "validated": true, "ani": 82.8439, "matched_fragments": 711, "total_fragments": 1154, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 80.6949, "matched_fragments": 542, "total_fragments": 1154, "ani_threshold": 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