{ "type": "genome", "identifier": "GCF_003602055.1", "organism": "Rahnella inusitata", "title": "Rahnella inusitata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003602055.1", "bioproject": "PRJNA224116", "biosample": "SAMN10095182", "wgs_master": "RAHG00000000.1", "refseq_category": "na", "taxid": "58169", "species_taxid": "58169", "organism_name": "Rahnella inusitata", "infraspecific_name": "strain=DSM 30078", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/01", "asm_name": "ASM360205v1", "asm_submitter": "Institut Pasteur", "gbrs_paired_asm": "GCA_003602055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/602/055/GCF_003602055.1_ASM360205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4910561", "genome_size_ungapped": "4910561", "gc_percent": "53.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003602055.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4428", "protein_coding_gene_count": "4318", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-01", "dateModified": "2018-10-01", "datePublished": "2018-10-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Rahnella inusitata" ], "sample_taxid": [ "58169" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.393 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4910561", "Number of Sequences": "30", "Longest Sequences (bp)": "976602", "N50 (bp)": "369048", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.2", "Number of CDSs": "4373", "Average Protein Length": "327.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rahnella inusitata", "strain": "strain=DSM 30078", "accession": "GCA_003602055.1", "taxid": 58169, "species_taxid": 58169, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rahnella inusitata", "strain": "strain=DSM 30078", "accession": "GCA_003263515.1", "taxid": 58169, "species_taxid": 58169, "relation_to_type": "type", "validated": true, "ani": 99.9825, "matched_fragments": 1589, "total_fragments": 1626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, "relation_to_type": "type", "validated": true, "ani": 87.9589, "matched_fragments": 1400, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella victoriana", "strain": "strain=DSM 27397", "accession": "GCA_004330295.1", "taxid": 1510570, "species_taxid": 1510570, "relation_to_type": "type", "validated": true, "ani": 85.7942, "matched_fragments": 1288, "total_fragments": 1626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella laticis", "strain": "strain=SAP-17", "accession": "GCA_015644585.1", 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