{
    "type": "genome",
    "identifier": "GCF_003602185.1",
    "organism": "Rahnella variigena",
    "title": "Rahnella variigena",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003602185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10095714",
        "wgs_master": "RAHI00000000.1",
        "refseq_category": "na",
        "taxid": "574964",
        "species_taxid": "574964",
        "organism_name": "Rahnella variigena",
        "infraspecific_name": "strain=CIP 105588",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/01",
        "asm_name": "ASM360218v1",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_003602185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/602/185/GCF_003602185.1_ASM360218v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5364583",
        "genome_size_ungapped": "5364583",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "66",
        "contig_count": "66",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003602185.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "4916",
        "protein_coding_gene_count": "4774",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-01",
    "dateModified": "2018-10-01",
    "datePublished": "2018-10-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rahnella variigena"
        ],
        "sample_taxid": [
            "574964"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.524 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5364583",
        "Number of Sequences": "66",
        "Longest Sequences (bp)": "425003",
        "N50 (bp)": "178977",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "4814",
        "Average Protein Length": "320.7",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rahnella variigena",
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                "relation_to_type": "type",
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                "ani": 100.0,
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            },
            {
                "organism_name": "Rahnella variigena",
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            },
            {
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                "relation_to_type": "type",
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            {
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                "accession": "GCA_019049625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_003602095.1",
                "taxid": 1510574,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1382,
                "total_fragments": 1755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bruchi",
                "strain": "strain=DSM 27398",
                "accession": "GCA_003614975.1",
                "taxid": 1510573,
                "species_taxid": 1510573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9665,
                "matched_fragments": 1429,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Rahnella victoriana",
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                "accession": "GCA_004330295.1",
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                "species_taxid": 1510570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9767,
                "matched_fragments": 1423,
                "total_fragments": 1755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella perminowiae",
                "strain": "strain=SL6",
                "accession": "GCA_019049755.1",
                "taxid": 2816244,
                "species_taxid": 2816244,
                "relation_to_type": "type",
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                "ani": 87.3672,
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                "total_fragments": 1755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella rivi",
                "strain": "strain=FC061912-K",
                "accession": "GCA_019049655.1",
                "taxid": 2816249,
                "species_taxid": 2816249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3329,
                "matched_fragments": 1316,
                "total_fragments": 1755,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2604,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_003610915.1",
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                "total_fragments": 1755,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_019049675.1",
                "gtdb_species": "s__Rahnella sp019049675",
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                "matched_fragments": 1546,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rahnella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "variigena"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}