{ "type": "genome", "identifier": "GCF_003605365.2", "organism": "Siminovitchia fortis", "title": "Siminovitchia fortis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003605365.2", "bioproject": "PRJNA224116", "biosample": "SAMN10060747", "wgs_master": "QYTU00000000.2", "refseq_category": "na", "taxid": "254758", "species_taxid": "254758", "organism_name": "Siminovitchia fortis", "infraspecific_name": "strain=DSM 16012", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/14", "asm_name": "ASM360536v2", "asm_submitter": "Anhui Agricultural University", "gbrs_paired_asm": "GCA_003605365.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/605/365/GCF_003605365.2_ASM360536v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3607409", "genome_size_ungapped": "3607409", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "125", "contig_count": "125", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003605365.2-RS_2024_08_05", "annotation_date": "2024-08-05", "total_gene_count": "3648", "protein_coding_gene_count": "3527", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-14", "dateModified": "2019-01-14", "datePublished": "2019-01-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Siminovitchia fortis" ], "sample_taxid": [ "254758" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.029 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3607409", "Number of Sequences": "125", "Longest Sequences (bp)": "319379", "N50 (bp)": "70439", "Gap Ratio (%)": "0.000859", "GCcontent (%)": "43.7", "Number of CDSs": "3552", "Average Protein Length": "285.8", "Coding Ratio (%)": "84.4", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Siminovitchia fortis", "strain": "strain=DSM 16012", "accession": "GCA_003605365.2", "taxid": 254758, "species_taxid": 254758, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1145, "total_fragments": 1149, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Siminovitchia fordii", "strain": "strain=DSM 16014", "accession": "GCA_000374565.1", "taxid": 254759, "species_taxid": 254759, "relation_to_type": "type", "validated": true, "ani": 84.5461, "matched_fragments": 897, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siminovitchia acidinfaciens", "strain": "strain=3-2-2", "accession": "GCA_003605385.2", "taxid": 2321395, "species_taxid": 2321395, "relation_to_type": "type", "validated": true, "ani": 81.237, "matched_fragments": 691, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siminovitchia thermophila", "strain": "strain=DSM 105453", "accession": "GCA_016909185.1", "taxid": 1245522, "species_taxid": 1245522, "relation_to_type": "type", "validated": true, "ani": 77.9938, "matched_fragments": 241, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 77.6686, "matched_fragments": 50, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia citrisecundus", "strain": "strain=FJAT-49732", "accession": "GCA_018343695.1", "taxid": 2833583, "species_taxid": 2833583, "relation_to_type": "type", "validated": true, "ani": 77.1161, "matched_fragments": 97, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia panacisoli", "strain": "strain=KACC 17503", "accession": "GCA_024626525.1", "taxid": 1255251, "species_taxid": 1255251, "relation_to_type": "type", "validated": true, "ani": 76.6098, "matched_fragments": 101, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus campisalis", "strain": "strain=SA2-6", "accession": "GCA_000986785.1", "taxid": 1408103, "species_taxid": 1408103, "relation_to_type": "type", "validated": true, "ani": 76.3953, "matched_fragments": 53, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003605365.2", "gtdb_species": "s__Siminovitchia fortis", "ani": 100.0, "matched_fragments": 1145, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 16, "status": "conclusive" }, { "accession": "GCF_000374565.1", "gtdb_species": "s__Siminovitchia fordii", "ani": 84.5529, "matched_fragments": 898, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003605405.2", "gtdb_species": "s__Siminovitchia terrae", "ani": 83.9193, "matched_fragments": 855, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009928435.1", "gtdb_species": "s__Siminovitchia sp009928435", "ani": 82.5788, "matched_fragments": 715, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014836955.1", "gtdb_species": "s__Siminovitchia sp014836955", "ani": 82.3458, "matched_fragments": 761, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605385.1", "gtdb_species": "s__Siminovitchia acidinfaciens", "ani": 81.2523, "matched_fragments": 688, "total_fragments": 1149, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "96.47", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Siminovitchia", "fortis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }