{
    "type": "genome",
    "identifier": "GCF_003605405.2",
    "organism": "Siminovitchia terrae",
    "title": "Siminovitchia terrae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Anhui Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003605405.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10077956",
        "wgs_master": "QYTW00000000.2",
        "refseq_category": "reference genome",
        "taxid": "1914933",
        "species_taxid": "1914933",
        "organism_name": "Siminovitchia terrae",
        "infraspecific_name": "strain=LMG 29736",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/15",
        "asm_name": "ASM360540v2",
        "asm_submitter": "Anhui Agricultural University",
        "gbrs_paired_asm": "GCA_003605405.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/605/405/GCF_003605405.2_ASM360540v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5302661",
        "genome_size_ungapped": "5302550",
        "gc_percent": "40.500000",
        "replicon_count": "0",
        "scaffold_count": "68",
        "contig_count": "68",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003605405.2-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "5388",
        "protein_coding_gene_count": "5166",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-15",
    "dateModified": "2018-12-15",
    "datePublished": "2018-12-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Siminovitchia terrae"
        ],
        "sample_taxid": [
            "1914933"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.501 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5302661",
        "Number of Sequences": "68",
        "Longest Sequences (bp)": "507736",
        "N50 (bp)": "141235",
        "Gap Ratio (%)": "0.003225",
        "GCcontent (%)": "40.7",
        "Number of CDSs": "5116",
        "Average Protein Length": "276.1",
        "Coding Ratio (%)": "79.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Siminovitchia fortis",
                "strain": "strain=DSM 16012",
                "accession": "GCA_003605365.2",
                "taxid": 254758,
                "species_taxid": 254758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7217,
                "matched_fragments": 855,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia fordii",
                "strain": "strain=DSM 16014",
                "accession": "GCA_000374565.1",
                "taxid": 254759,
                "species_taxid": 254759,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4451,
                "matched_fragments": 994,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siminovitchia acidinfaciens",
                "strain": "strain=3-2-2",
                "accession": "GCA_003605385.2",
                "taxid": 2321395,
                "species_taxid": 2321395,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6346,
                "matched_fragments": 763,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8425,
                "matched_fragments": 78,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lederbergia citrisecundus",
                "strain": "strain=FJAT-49732",
                "accession": "GCA_018343695.1",
                "taxid": 2833583,
                "species_taxid": 2833583,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7553,
                "matched_fragments": 124,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus rhizophilus",
                "strain": "strain=FJAT-49825",
                "accession": "GCA_018343535.1",
                "taxid": 2833579,
                "species_taxid": 2833579,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6146,
                "matched_fragments": 55,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Heyndrickxia oleronia",
                "strain": "strain=DSM 9356",
                "accession": "GCA_025263665.1",
                "taxid": 38875,
                "species_taxid": 38875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1743,
                "matched_fragments": 87,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Heyndrickxia oleronia",
                "strain": "strain=DSM 9356",
                "accession": "GCA_017809215.1",
                "taxid": 38875,
                "species_taxid": 38875,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1582,
                "matched_fragments": 86,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus dongyingensis",
                "strain": "strain=BY2G20",
                "accession": "GCA_019933155.2",
                "taxid": 2874282,
                "species_taxid": 2874282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8747,
                "matched_fragments": 70,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Litchfieldia alkalitelluris",
                "strain": "strain=DSM 16976",
                "accession": "GCA_002019645.1",
                "taxid": 304268,
                "species_taxid": 304268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5498,
                "matched_fragments": 55,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus citreus",
                "strain": "strain=FJAT-50051",
                "accession": "GCA_018343545.2",
                "taxid": 2833578,
                "species_taxid": 2833578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2799,
                "matched_fragments": 53,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus thuringiensis",
                "strain": "strain=ATCC 10792",
                "accession": "GCA_002119445.1",
                "taxid": 1428,
                "species_taxid": 1428,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.2525,
                "matched_fragments": 53,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus cucumis",
                "strain": "strain=DSM 101566",
                "accession": "GCA_016908975.1",
                "taxid": 1740721,
                "species_taxid": 1740721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0497,
                "matched_fragments": 56,
                "total_fragments": 1735,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.38,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003605405.2",
                "gtdb_species": "s__Siminovitchia terrae",
                "ani": 100.0,
                "matched_fragments": 1731,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009928435.1",
                "gtdb_species": "s__Siminovitchia sp009928435",
                "ani": 90.7409,
                "matched_fragments": 985,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014836955.1",
                "gtdb_species": "s__Siminovitchia sp014836955",
                "ani": 90.4762,
                "matched_fragments": 1233,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003605365.2",
                "gtdb_species": "s__Siminovitchia fortis",
                "ani": 83.7236,
                "matched_fragments": 856,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.09",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_000374565.1",
                "gtdb_species": "s__Siminovitchia fordii",
                "ani": 83.303,
                "matched_fragments": 1014,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003605385.1",
                "gtdb_species": "s__Siminovitchia acidinfaciens",
                "ani": 80.6751,
                "matched_fragments": 756,
                "total_fragments": 1735,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_C;g__Siminovitchia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "96.47",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Siminovitchia",
        "terrae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}