{ "type": "genome", "identifier": "GCF_003605475.1", "organism": "Aurantiacibacter aquimixticola", "title": "Aurantiacibacter aquimixticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen Medical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003605475.1", "bioproject": "PRJNA224116", "biosample": "SAMN10130974", "wgs_master": "RAHX00000000.1", "refseq_category": "reference genome", "taxid": "1958945", "species_taxid": "1958945", "organism_name": "Aurantiacibacter aquimixticola", "infraspecific_name": "strain=JSSK-14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM360547v1", "asm_submitter": "Xiamen Medical College", "gbrs_paired_asm": "GCA_003605475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/605/475/GCF_003605475.1_ASM360547v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2552891", "genome_size_ungapped": "2552891", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003605475.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "2579", "protein_coding_gene_count": "2522", "non_coding_gene_count": "51", "pubmed_id": "28820100" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantiacibacter aquimixticola" ], "sample_taxid": [ "1958945" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Soesokkak" ], "sample_host_location_id": [], "data_size": "0.708 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2552891", "Number of Sequences": "2", "Longest Sequences (bp)": "2511056", "N50 (bp)": "2511056", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "2536", "Average Protein Length": "309.7", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter gangjinensis", "strain": "strain=K7-2", "accession": "GCA_001010925.1", "taxid": 502682, "species_taxid": 502682, "relation_to_type": "type", "validated": true, "ani": 80.1444, "matched_fragments": 504, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter gangjinensis", "strain": "strain=CGMCC 1.15024", "accession": "GCA_001886695.1", "taxid": 502682, "species_taxid": 502682, "relation_to_type": "type", "validated": true, "ani": 79.9702, "matched_fragments": 531, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 79.7223, "matched_fragments": 474, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 79.6459, "matched_fragments": 525, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter sediminis", "strain": "strain=JGD-13", "accession": "GCA_016019885.1", "taxid": 2793064, "species_taxid": 2793064, "relation_to_type": "type", "validated": true, "ani": 79.5541, "matched_fragments": 483, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 79.4362, "matched_fragments": 446, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter marinus", "strain": "strain=KCTC 23554", "accession": "GCA_001021555.1", "taxid": 874156, "species_taxid": 874156, "relation_to_type": "type", "validated": true, "ani": 78.8703, "matched_fragments": 402, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter marinus", "strain": "strain=HWDM-33", "accession": "GCA_001013305.1", "taxid": 874156, "species_taxid": 874156, "relation_to_type": "type", "validated": true, "ani": 78.8274, "matched_fragments": 404, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter suaedae", "strain": "strain=GH3-15", "accession": "GCA_005434915.1", "taxid": 2545755, "species_taxid": 2545755, "relation_to_type": "type", "validated": true, "ani": 78.6027, "matched_fragments": 340, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 78.4854, "matched_fragments": 316, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.4555, "matched_fragments": 253, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.3638, "matched_fragments": 315, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania soli", "strain": "strain=6D36", "accession": "GCA_015529805.1", "taxid": 2782568, "species_taxid": 2782568, "relation_to_type": "type", "validated": true, "ani": 78.3614, "matched_fragments": 270, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter atlanticus", "strain": "strain=s21-N3", "accession": "GCA_001077815.2", "taxid": 1648404, "species_taxid": 1648404, "relation_to_type": "type", "validated": true, "ani": 78.3469, "matched_fragments": 343, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.335, "matched_fragments": 338, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania intermedia", "strain": "strain=GH38", "accession": "GCA_019711615.1", "taxid": 2867244, "species_taxid": 2867244, "relation_to_type": "type", "validated": true, "ani": 78.3282, "matched_fragments": 318, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 78.1437, "matched_fragments": 284, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter neustonensis", "strain": "strain=DSM 9434", "accession": "GCA_001663175.1", "taxid": 1112, "species_taxid": 1112, "relation_to_type": "type", "validated": true, "ani": 77.9585, "matched_fragments": 280, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus ponticola", "strain": "strain=GM-16", "accession": "GCA_004004515.1", "taxid": 2217664, "species_taxid": 2217664, "relation_to_type": "type", "validated": true, "ani": 77.6689, "matched_fragments": 201, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus gelatinilyticus", "strain": "strain=1NDH52", "accession": "GCA_018398395.1", "taxid": 2835536, "species_taxid": 2835536, "relation_to_type": "type", "validated": true, "ani": 77.6195, "matched_fragments": 245, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas parva", "strain": "strain=17J27-24", "accession": "GCA_004564275.1", "taxid": 2555898, "species_taxid": 2555898, "relation_to_type": "type", "validated": true, "ani": 77.1823, "matched_fragments": 152, "total_fragments": 850, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003605475.1", "gtdb_species": "s__Alteraurantiacibacter aquimixticola_A", "ani": 100.0, "matched_fragments": 850, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001886695.1", "gtdb_species": "s__Alteraurantiacibacter gangjinensis", "ani": 79.9709, "matched_fragments": 530, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902498745.1", "gtdb_species": "s__Alteraurantiacibacter sp902498745", "ani": 79.9257, "matched_fragments": 524, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003605195.1", "gtdb_species": "s__Alteraurantiacibacter odishensis", "ani": 79.7182, "matched_fragments": 473, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001010945.1", "gtdb_species": "s__Alteraurantiacibacter luteus", "ani": 79.6437, "matched_fragments": 526, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016019885.1", "gtdb_species": "s__Alteraurantiacibacter sp016019885", "ani": 79.5234, "matched_fragments": 486, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002367375.1", "gtdb_species": "s__Alteraurantiacibacter sp002367375", "ani": 79.2683, "matched_fragments": 376, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001687545.1", "gtdb_species": "s__Paraurantiacibacter namhicola", "ani": 79.112, "matched_fragments": 423, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Paraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001021555.1", "gtdb_species": "s__Alteraurantiacibacter marinus", "ani": 78.8703, "matched_fragments": 402, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900105095.1", "gtdb_species": "s__Erythrobacter sp900105095", "ani": 78.4922, "matched_fragments": 356, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015529805.1", "gtdb_species": "s__Qipengyuania soli", "ani": 78.3762, "matched_fragments": 269, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Qipengyuania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011765465.1", "gtdb_species": "s__Erythrobacter sp011765465", "ani": 78.2202, "matched_fragments": 363, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013370205.1", "gtdb_species": "s__Actirhodobacter atriluteus", "ani": 78.0882, "matched_fragments": 267, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Actirhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009828065.1", "gtdb_species": "s__Croceibacterium soli", "ani": 78.0165, "matched_fragments": 323, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902506425.1", "gtdb_species": "s__Novosphingobium sp902506425", "ani": 77.8171, "matched_fragments": 206, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004004515.1", "gtdb_species": "s__Croceicoccus ponticola", "ani": 77.6574, "matched_fragments": 203, "total_fragments": 850, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Croceicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Aurantiacibacter", "aquimixticola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }