{ "type": "genome", "identifier": "GCF_003605645.1", "organism": "Vibrio sinensis", "title": "Vibrio sinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003605645.1", "bioproject": "PRJNA224116", "biosample": "SAMN09835476", "wgs_master": "QVMU00000000.1", "refseq_category": "reference genome", "taxid": "2302434", "species_taxid": "2302434", "organism_name": "Vibrio sinensis", "infraspecific_name": "strain=BEI233", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM360564v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_003605645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/605/645/GCF_003605645.1_ASM360564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5302048", "genome_size_ungapped": "5302048", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "219", "contig_count": "219", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003605645.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "4766", "protein_coding_gene_count": "4590", "non_coding_gene_count": "113", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio sinensis" ], "sample_taxid": [ "2302434" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: eastern marginal seas" ], "sample_host_location_id": [], "data_size": "1.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.18, "strain_heterogeneity": 14.29, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5302048", "Number of Sequences": "219", "Longest Sequences (bp)": "854525", "N50 (bp)": "170405", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "4628", "Average Protein Length": "320.6", "Coding Ratio (%)": "84.0", "Number of rRNAs": "6", "Number of tRNAs": "101", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio sinensis", "strain": "strain=BEI233", "accession": "GCA_003605645.1", "taxid": 2302434, "species_taxid": 2302434, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1697, "total_fragments": 1704, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 80.8469, "matched_fragments": 515, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 80.7211, "matched_fragments": 531, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 80.6673, "matched_fragments": 508, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.9005, "matched_fragments": 476, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.8923, "matched_fragments": 462, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 79.7342, "matched_fragments": 424, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.6967, "matched_fragments": 446, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.6577, "matched_fragments": 372, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 79.6441, "matched_fragments": 416, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.641, "matched_fragments": 384, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pacinii", "strain": "strain=DSM 19139", "accession": "GCA_000711795.1", "taxid": 170674, "species_taxid": 170674, "relation_to_type": "type", "validated": true, "ani": 79.527, "matched_fragments": 384, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 79.4624, "matched_fragments": 363, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.4213, "matched_fragments": 359, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.298, "matched_fragments": 345, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 79.2553, "matched_fragments": 345, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_002224265.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 79.24, "matched_fragments": 348, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio salilacus", "strain": "strain=DSG-S6", "accession": "GCA_002811245.1", "taxid": 1323749, "species_taxid": 1323749, "relation_to_type": "type", "validated": true, "ani": 79.1947, "matched_fragments": 367, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. francensis", "strain": "strain=02/041", "accession": "GCA_012395215.1", "taxid": 1443279, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 79.0836, "matched_fragments": 339, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.911, "matched_fragments": 367, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.18, "strain_heterogeneity": 14.29 }, 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0.034, "vibrio_cell_shape": 0.327, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Vibrio", "sinensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }