{ "type": "genome", "identifier": "GCF_003606345.3", "organism": "Bartonella krasnovii", "title": "Bartonella krasnovii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Hebrew University of Jerusalem", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003606345.3", "bioproject": "PRJNA224116", "biosample": "SAMN08765112", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2267275", "species_taxid": "2267275", "organism_name": "Bartonella krasnovii", "infraspecific_name": "strain=OE 1-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/08/22", "asm_name": "ASM360634v3", "asm_submitter": "The Hebrew University of Jerusalem", "gbrs_paired_asm": "GCA_003606345.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/606/345/GCF_003606345.3_ASM360634v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2186621", "genome_size_ungapped": "2186621", "gc_percent": "38.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003606345.3-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "1842", "protein_coding_gene_count": "1709", "non_coding_gene_count": "52", "pubmed_id": "32100689" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-08-22", "dateModified": "2019-08-22", "datePublished": "2019-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella krasnovii" ], "sample_taxid": [ "2267275" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel: Negev Desert" ], "sample_host_location_id": [], "data_size": "0.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2186621", "Number of Sequences": "2", "Longest Sequences (bp)": "2157564", "N50 (bp)": "2157564", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.1", "Number of CDSs": "1823", "Average Protein Length": "302.9", "Coding Ratio (%)": "75.7", "Number of rRNAs": "6", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 727, "total_fragments": 728, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 93.0209, "matched_fragments": 534, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_902825135.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 91.635, "matched_fragments": 594, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella mastomydis", "strain": "strain=008", "accession": "GCA_900185775.1", "taxid": 1820002, "species_taxid": 1820002, "relation_to_type": "type", "validated": true, "ani": 91.6217, "matched_fragments": 617, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=F9251", "accession": "GCA_000278315.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 91.5772, "matched_fragments": 599, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_000518165.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 91.5345, "matched_fragments": 594, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 90.6456, "matched_fragments": 643, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella gabonensis", "strain": "strain=669", "accession": "GCA_903679515.1", "taxid": 2699889, "species_taxid": 2699889, "relation_to_type": "type", "validated": true, "ani": 90.027, "matched_fragments": 561, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella tribocorum", "strain": "strain=type strain:506 = CIP 105476", "accession": "GCA_000196435.1", "taxid": 85701, "species_taxid": 85701, "relation_to_type": "suspected-type", "validated": true, "ani": 89.4071, "matched_fragments": 654, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella florencae", "strain": "strain=R4", "accession": "GCA_000312525.1", "taxid": 928210, "species_taxid": 928210, "relation_to_type": "type", "validated": true, "ani": 83.6564, "matched_fragments": 538, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella phoceensis", "strain": "strain=CIP107707", "accession": "GCA_902825145.1", "taxid": 270249, "species_taxid": 270249, "relation_to_type": "type", "validated": true, "ani": 82.6149, "matched_fragments": 479, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.2995, "matched_fragments": 494, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.2063, "matched_fragments": 496, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella callosciuri", "strain": "strain=DSM 28538", "accession": "GCA_014203215.1", "taxid": 686223, "species_taxid": 686223, "relation_to_type": "type", "validated": true, "ani": 82.2002, "matched_fragments": 468, "total_fragments": 728, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003606345.3", "gtdb_species": "s__Bartonella krasnovii", "ani": 100.0, "matched_fragments": 726, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000518165.1", "gtdb_species": "s__Bartonella elizabethae", "ani": 91.5349, "matched_fragments": 592, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003606325.2", "gtdb_species": "s__Bartonella kosoyi", "ani": 90.6793, "matched_fragments": 641, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_903679515.1", "gtdb_species": "s__Bartonella gabonensis", "ani": 89.9992, "matched_fragments": 562, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196435.1", "gtdb_species": "s__Bartonella tribocorum", "ani": 89.4446, "matched_fragments": 651, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002777915.1", "gtdb_species": "s__Bartonella tribocorum_A", "ani": 89.2962, "matched_fragments": 611, "total_fragments": 728, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", 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