{ "type": "genome", "identifier": "GCF_003609595.1", "organism": "Caminicella sporogenes", "title": "Caminicella sporogenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003609595.1", "bioproject": "PRJNA224116", "biosample": "SAMN05504940", "wgs_master": "MCHZ00000000.1", "refseq_category": "reference genome", "taxid": "166485", "species_taxid": "166485", "organism_name": "Caminicella sporogenes", "infraspecific_name": "strain=AM 1114", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM360959v1", "asm_submitter": "Institute Pasteur", "gbrs_paired_asm": "GCA_003609595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/609/595/GCF_003609595.1_ASM360959v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2478486", "genome_size_ungapped": "2478486", "gc_percent": "28.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003609595.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2460", "protein_coding_gene_count": "2326", "non_coding_gene_count": "112", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Caminicella sporogenes" ], "sample_taxid": [ "166485" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: East-Pacific Rise" ], "sample_host_location_id": [], "data_size": "0.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2478486", "Number of Sequences": "31", "Longest Sequences (bp)": "606533", "N50 (bp)": "167995", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.6", "Number of CDSs": "2359", "Average Protein Length": "306.8", "Coding Ratio (%)": "87.6", "Number of rRNAs": "5", "Number of tRNAs": "99", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caminicella sporogenes", "strain": "strain=AM 1114", "accession": "GCA_003609595.1", "taxid": 166485, "species_taxid": 166485, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 803, "total_fragments": 807, 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"organism_name": "Crassaminicella thermophila", "strain": "strain=SY095", "accession": "GCA_008152325.1", "taxid": 2599308, "species_taxid": 2599308, "relation_to_type": "type", "validated": true, "ani": 76.5569, "matched_fragments": 162, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crassaminicella profunda", "strain": "strain=Ra1766H", "accession": "GCA_019884785.1", "taxid": 1286698, "species_taxid": 1286698, "relation_to_type": "type", "validated": true, "ani": 76.0204, "matched_fragments": 138, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermohalobacter berrensis", "strain": "strain=CTT3", "accession": "GCA_003609645.1", "taxid": 99594, "species_taxid": 99594, "relation_to_type": "type", "validated": true, "ani": 75.8843, "matched_fragments": 101, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssisolibacter fermentans", "strain": "strain=MCWD3", "accession": "GCA_001559865.1", "taxid": 1766203, "species_taxid": 1766203, "relation_to_type": "type", "validated": true, "ani": 75.8017, "matched_fragments": 90, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=ATCC 638", "accession": "GCA_006802875.1", "taxid": 1490, "species_taxid": 1490, "relation_to_type": "type", "validated": true, "ani": 75.6928, "matched_fragments": 78, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Keratinibaculum paraultunense", "strain": "strain=DSM 26752", "accession": "GCA_004343355.1", "taxid": 1278232, "species_taxid": 1278232, "relation_to_type": "type", "validated": true, "ani": 75.5031, "matched_fragments": 59, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottschalkia purinilytica", "strain": "strain=DSM 1384", "accession": "GCA_001190785.1", "taxid": 1503, "species_taxid": 1503, "relation_to_type": "type", "validated": true, "ani": 75.4275, "matched_fragments": 86, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium benzoelyticum", "strain": "strain=JC272", "accession": "GCA_001006285.1", "taxid": 1629550, "species_taxid": 1629550, "relation_to_type": "type", "validated": true, "ani": 75.4251, "matched_fragments": 78, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium dentum", "strain": "strain=SKVG24", "accession": "GCA_012922555.1", "taxid": 2662455, "species_taxid": 2662455, "relation_to_type": "type", "validated": true, "ani": 75.332, "matched_fragments": 90, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900142285.1", 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