# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_103	LOCUS_01020	sequence1:88559..89368(-)	internal_stop_codon	89648..89650(-)		WP_150880979.1	ISL3 family transposase	100.0	65.9	64.3
MGA_104	LOCUS_01030	sequence1:89648..89815(-)	internal_stop_codon	89648..89650(-)		WP_150880979.1	ISL3 family transposase	81.8	11.0	51.1
MGA_105	LOCUS_01040	sequence1:89981..90211(+)	partial			WP_011921638.1	ATP-dependent zinc metalloprotease FtsH	97.4	11.4	80.0
MGA_111	LOCUS_01080	sequence1:100613..100996(-)	internal_stop_codon	101021..101023(-)		WP_115283723.1	IS3 family transposase	78.0	22.2	86.0
MGA_112	LOCUS_01090	sequence1:101021..101488(-)	frameshift,internal_stop_codon	101020..101022(-)	101568	WP_165694720.1	IS3-like element IS861 family transposase	100.0	34.6	74.2
MGA_113	LOCUS_01100	sequence1:101464..102000(-)	partial			WP_081026662.1	IS3 family transposase	96.6	73.5	63.4
MGA_114	LOCUS_01110	sequence1:102079..102651(-)	frameshift,internal_stop_codon	102936..102938(-)	102754,102917,102839	WP_093649644.1	ISL3 family transposase	81.1	24.4	76.0
MGA_136	LOCUS_01330	sequence1:126795..127208(+)	partial			WP_000265622.1	competence type IV pilus minor pilin ComGG	94.2	73.0	36.4
MGA_153	LOCUS_01500	sequence1:142692..144752(+)	partial			WP_011836870.1	ZmpA/ZmpB/ZmpC family metallo-endopeptidase	71.1	18.1	24.5
MGA_154	LOCUS_01510	sequence1:144824..146935(+)	partial			WP_002379133.1	isopeptide-forming domain-containing fimbrial protein	62.4	41.6	25.5
MGA_155	LOCUS_01520	sequence1:146935..155406(+)	partial			WP_002379133.1	isopeptide-forming domain-containing fimbrial protein	20.1	60.9	26.4
MGA_171	LOCUS_01680	sequence1:169923..170096(+)	frameshift,internal_stop_codon	170094..170096(+),169881..169883(+)	170132	WP_000572848.1	XRE/MutR family transcriptional regulator	96.5	19.2	49.1
MGA_172	LOCUS_01690	sequence1:170204..170485(+)	frameshift,internal_stop_codon	170094..170096(+)	170132	WP_000570730.1	XRE/MutR family transcriptional regulator	79.6	25.8	40.5
MGA_173	LOCUS_01700	sequence1:170562..170720(+)	internal_stop_codon	170508..170510(+)		WP_002896547.1	ABC transporter ATP-binding protein	90.4	9.0	61.7
MGA_195	LOCUS_01920	sequence1:195199..197049(+)	partial			WP_012775427.1	LPXTG cell wall anchor domain-containing protein	42.7	32.3	31.7
MGA_196	LOCUS_01930	sequence1:197174..198769(+)	partial			WP_011674893.1	outer membrane protein	34.3	30.8	27.4
MGA_197	LOCUS_01940	sequence1:199181..201010(+)	partial			WP_013529147.1	TonB family protein	20.5	33.2	30.8
MGA_200	LOCUS_01970	sequence1:204120..206075(-)	partial			WP_010865190.1	S-layer homology domain-containing protein	37.6	67.6	25.3
MGA_206	LOCUS_02030	sequence1:215116..215748(-)	partial			WP_002262179.1	TlpA disulfide reductase family protein	69.0	77.5	50.3
MGA_255	LOCUS_02520	sequence1:265934..266227(+)	partial			WP_011459234.1	reverse transcriptase/maturase family protein	79.4	16.1	36.4
MGA_269	LOCUS_02660	sequence1:283222..283734(+)	partial			WP_075566313.1	DUF2812 domain-containing protein	67.1	64.9	41.9
MGA_299	LOCUS_02950	sequence1:320913..321449(+)	partial			WP_081026662.1	IS3 family transposase	96.6	73.5	59.3
MGA_303	LOCUS_02990	sequence1:325607..326473(+)	frameshift,internal_stop_codon	326661..326663(+)	326440	WP_002901047.1	Cof-type HAD-IIB family hydrolase	98.6	60.8	52.8
MGA_304	LOCUS_03000	sequence1:326454..326663(+)	frameshift,internal_stop_codon	326661..326663(+)	326452	WP_000453148.1	Cof-type HAD-IIB family hydrolase	100.0	14.9	55.1
MGA_305	LOCUS_03010	sequence1:326703..326972(+)	frameshift,internal_stop_codon	326661..326663(+)	326440	WP_002901047.1	Cof-type HAD-IIB family hydrolase	93.3	17.8	77.1
MGA_309	LOCUS_03050	sequence1:329736..330101(+)	frameshift		330095	WP_002911884.1	cysteine hydrolase	95.9	62.7	72.4
MGA_310	LOCUS_03060	sequence1:330098..330298(+)	frameshift		330095	WP_002263473.1	cysteine hydrolase	100.0	36.1	78.8
MGA_352	LOCUS_03480	sequence1:375246..375560(+)	partial			WP_004194153.1	DNA-directed RNA polymerase subunit omega	62.5	62.5	96.9
MGA_373	LOCUS_03680	sequence1:401532..401945(-)	frameshift		401904	WP_088197863.1	IS3-like element ISSag2 family transposase	92.0	34.2	81.7
MGA_374	LOCUS_03690	sequence1:401881..402312(-)	frameshift		402512,402355,401902,402431	WP_088197863.1	IS3-like element ISSag2 family transposase	98.6	38.6	71.1
MGA_375	LOCUS_03700	sequence1:402492..402626(-)	frameshift		402512,402355,402431	WP_088197863.1	IS3-like element ISSag2 family transposase	86.4	10.3	78.9
MGA_400	LOCUS_03950	sequence1:424645..425742(+)	internal_stop_codon	425740..425742(+)		WP_020902488.1	hypothetical protein	99.7	69.5	72.1
MGA_401	LOCUS_03960	sequence1:425782..426219(+)	internal_stop_codon	425740..425742(+)		WP_020902488.1	hypothetical protein	100.0	27.6	80.0
MGA_405	LOCUS_04000	sequence1:432100..434757(+)	partial			WP_013230933.1	DEAD/DEAH box helicase	53.6	71.7	28.8
MGA_451	LOCUS_04460	sequence1:483021..485126(+)	partial			WP_078232918.1	Ltp family lipoprotein	37.2	35.1	35.0
MGA_507	LOCUS_05020	sequence1:544282..544722(+)	partial			WP_010972203.1	GNAT family N-acetyltransferase	72.6	68.4	42.5
MGA_546	LOCUS_05410	sequence1:594971..595411(+)	partial			WP_012775213.1	TIGR02206 family membrane protein	94.5	59.9	74.1
MGA_552	LOCUS_05470	sequence1:608210..608788(+)	partial			WP_003723551.1	YitT family protein	92.7	63.1	39.3
MGA_613	LOCUS_06080	sequence1:674226..679088(+)	partial			WP_012775357.1	S8 family serine peptidase	62.2	59.3	32.7
MGA_614	LOCUS_06090	sequence1:679350..681398(-)	partial			WP_012775427.1	LPXTG cell wall anchor domain-containing protein	15.8	12.8	36.9
MGA_683	LOCUS_06780	sequence1:762092..762307(-)	frameshift		762105,762330	WP_012775600.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	100.0	25.3	81.7
MGA_684	LOCUS_06790	sequence1:762644..762934(+)	partial			WP_000167699.1	GbpC/Spa domain-containing protein	70.8	4.5	48.6
MGA_687	LOCUS_06820	sequence1:764813..764989(+)	partial			WP_000048054.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_723	LOCUS_07180	sequence1:809062..810180(-)	partial			WP_011837698.1	DUF1700 domain-containing protein	23.1	41.2	46.5
MGA_725	LOCUS_07200	sequence1:810649..811098(+)	internal_stop_codon	811096..811098(+)		WP_012027102.1	permease	98.7	48.0	58.5
MGA_733	LOCUS_07280	sequence1:818223..818363(+)	partial			WP_002262310.1	TetR/AcrR family transcriptional regulator	100.0	21.7	89.1
MGA_735	LOCUS_07300	sequence1:819466..820032(+)	partial			WP_164979579.1	AAA domain-containing protein	98.4	20.2	55.7
MGA_761	LOCUS_07560	sequence1:841972..842460(+)	frameshift		842457,842436	WP_002935272.1	ABC transporter ATP-binding protein	100.0	31.7	98.1
MGA_762	LOCUS_07570	sequence1:842447..843493(+)	frameshift		842457,842436	WP_002935272.1	ABC transporter ATP-binding protein	98.9	67.3	97.1
MGA_784	LOCUS_07790	sequence1:867594..867740(+)	frameshift		867704	WP_011922516.1	GNAT family N-acetyltransferase	87.5	25.8	71.4
MGA_788	LOCUS_07830	sequence1:873141..873368(+)	frameshift,internal_stop_codon	873117..873119(+)	873338,873374	WP_012028183.1	GNAT family N-acetyltransferase	92.0	41.3	60.9
MGA_789	LOCUS_07840	sequence1:873381..873536(+)	frameshift,internal_stop_codon	873117..873119(+)	873338,873374	WP_012028183.1	GNAT family N-acetyltransferase	100.0	30.5	66.7
MGA_808	LOCUS_08030	sequence1:888717..889319(+)	partial			WP_011986620.1	BMC domain-containing protein	85.5	54.3	34.5
MGA_855	LOCUS_08500	sequence1:936280..936669(+)	partial			WP_000821307.1	CPBP family intramembrane metalloprotease	93.8	62.1	45.5
MGA_862	LOCUS_08570	sequence1:942632..942907(+)	frameshift		942611	WP_044682503.1	ATPase AAA	96.7	11.2	92.0
MGA_865	LOCUS_08600	sequence1:946813..946974(+)	partial			WP_000167699.1	GbpC/Spa domain-containing protein	71.7	2.3	84.2
MGA_866	LOCUS_08610	sequence1:947162..947560(+)	frameshift,internal_stop_codon	947509..947511(+)	947504,947547,947500	WP_004080948.1	glycosyltransferase	42.4	6.5	48.2
MGA_868	LOCUS_08630	sequence1:949218..949562(+)	frameshift		949713,949794,949653,949782,949607,949535	WP_000668317.1	peptide cleavage/export ABC transporter ComA	93.0	14.8	60.4
MGA_869	LOCUS_08640	sequence1:950169..950315(+)	frameshift,internal_stop_codon	950327..950329(+),950112..950114(+)	950468,950310,950123,949967,950356,950549,950168,949946,950015	WP_000668317.1	peptide cleavage/export ABC transporter ComA	93.8	6.3	68.9
MGA_870	LOCUS_08650	sequence1:951036..951326(+)	frameshift		950748,951012,950790,950868	WP_000668317.1	peptide cleavage/export ABC transporter ComA	97.9	13.1	58.5
MGA_872	LOCUS_08670	sequence1:951944..952792(+)	partial			WP_001017622.1	sensor histidine kinase	85.8	54.7	29.1
MGA_873	LOCUS_08680	sequence1:952807..953049(+)	frameshift,internal_stop_codon	953185..953187(+),953188..953190(+),953209..953211(+),953197..953199(+)	953235,953275,953085,953046	WP_002899529.1	competence system response regulator transcription factor ComE	100.0	31.5	37.5
MGA_875	LOCUS_08700	sequence1:954909..955403(+)	frameshift		955394	WP_000167699.1	GbpC/Spa domain-containing protein	98.2	9.8	73.9
MGA_877	LOCUS_08720	sequence1:955819..959820(+)	internal_stop_codon	955735..955737(+)		WP_000167699.1	GbpC/Spa domain-containing protein	99.7	81.4	78.6
MGA_882	LOCUS_08770	sequence1:969008..969913(+)	partial			WP_001071181.1	SNF2-related protein	99.7	13.3	84.4
MGA_885	LOCUS_08800	sequence1:970752..971234(-)	partial			WP_011963644.1	hypothetical protein	79.4	21.4	30.8
MGA_888	LOCUS_08830	sequence1:972595..973527(-)	partial			WP_011963645.1	hypothetical protein	82.9	74.9	27.1
MGA_896	LOCUS_08910	sequence1:978591..979439(+)	partial			WP_002211948.1	molybdopterin-synthase adenylyltransferase MoeB	52.8	56.6	27.5
MGA_905	LOCUS_09000	sequence1:987667..988350(+)	frameshift		987648,987570,987579	WP_000452052.1	ABC transporter ATP-binding protein	97.8	79.0	77.0
MGA_920	LOCUS_09150	sequence1:1002192..1002344(+)	partial			WP_029172398.1	IS200/IS605-like element ISSsu4 family transposase	98.0	31.8	65.3
MGA_921	LOCUS_09160	sequence1:1002307..1002519(+)	partial			WP_012775157.1	IS200/IS605-like element ISSsu4 family transposase	85.7	39.0	76.7
MGA_922	LOCUS_09170	sequence1:1002622..1002807(+)	internal_stop_codon	1002805..1002807(+)		WP_012775107.1	crosslink repair DNA glycosylase YcaQ family protein	78.7	14.4	83.3
MGA_938	LOCUS_09330	sequence1:1019165..1019614(-)	frameshift		1019633	WP_081026662.1	IS3 family transposase	92.6	59.0	64.5
MGA_968	LOCUS_09630	sequence1:1049170..1049367(-)	partial			WP_012775088.1	hypothetical protein	84.6	59.0	50.8
MGA_1041	LOCUS_10360	sequence1:1140386..1145824(-)	partial			WP_180947102.1	type I pullulanase	28.8	24.8	41.4
MGA_1073	LOCUS_10680	sequence1:1180741..1181316(-)	partial			WP_010922368.1	alkaline shock response membrane anchor protein AmaP	74.3	71.4	38.6
MGA_1080	LOCUS_10750	sequence1:1187002..1188048(-)	partial			WP_002936205.1	autorepressor SdpR family transcription factor	22.7	84.8	44.3
MGA_1083	LOCUS_10780	sequence1:1189178..1189582(+)	frameshift		1189142	WP_000490976.1	XRE family transcriptional regulator	97.0	57.0	61.8
MGA_1086	LOCUS_10810	sequence1:1191061..1191873(-)	partial			WP_011262945.1	signal transduction histidine-protein kinase/phosphatase UhpB	71.5	41.0	25.1
MGA_1096	LOCUS_10910	sequence1:1202754..1204496(-)	partial			WP_000056125.1	T7SS effector LXG polymorphic toxin	26.7	27.4	42.6
MGA_1103	LOCUS_10980	sequence1:1209275..1209601(-)	partial			WP_010964944.1	DUF4176 domain-containing protein	77.8	62.5	51.2
MGA_1118	LOCUS_11130	sequence1:1226128..1227474(-)	partial			WP_000301254.1	recombinase family protein	83.0	70.7	52.4
MGA_1119	LOCUS_11140	sequence1:1227383..1228561(-)	partial			WP_000301254.1	recombinase family protein	83.9	65.4	38.6
MGA_1123	LOCUS_11180	sequence1:1230913..1232031(-)	partial			WP_011122032.1	AAA family ATPase	72.6	44.9	41.6
MGA_1151	LOCUS_11460	sequence1:1259154..1268666(-)	partial			WP_051754043.1	polymorphic toxin-type HINT domain-containing protein	36.8	39.0	28.7
MGA_1153	LOCUS_11480	sequence1:1269281..1269964(-)	partial			WP_001086126.1	class B sortase	85.5	74.4	33.3
MGA_1166	LOCUS_11610	sequence1:1278075..1278296(-)	frameshift,internal_stop_codon	1278075..1278077(-)	1277969,1278026,1278035	WP_010922136.1	lipopolysaccharide biosynthesis protein	79.5	14.7	38.1
MGA_1167	LOCUS_11620	sequence1:1278297..1279121(-)	frameshift		1279129,1279195,1279204,1279123	WP_011837191.1	glycosyltransferase	100.0	84.5	46.5
MGA_1169	LOCUS_11640	sequence1:1280756..1281736(-)	partial			WP_011267456.1	glycosyltransferase	72.1	71.8	29.4
MGA_1207	LOCUS_12010	sequence1:1325646..1329020(-)	partial			WP_011475518.1	type II CRISPR RNA-guided endonuclease Cas9	55.7	54.6	24.2
MGA_1278	LOCUS_12720	sequence1:1407509..1410676(-)	partial			WP_011922168.1	family 16 glycosylhydrolase	85.0	62.8	75.6
MGA_1300	LOCUS_12940	sequence1:1433062..1433901(-)	partial			WP_010965609.1	glycosyltransferase family 2 protein	78.5	70.0	28.4
MGA_1332	LOCUS_13260	sequence1:1469237..1472737(-)	internal_stop_codon	1469237..1469239(-)		WP_078232918.1	Ltp family lipoprotein	18.4	24.9	47.0
MGA_1333	LOCUS_13270	sequence1:1473117..1476335(-)	partial			WP_020862723.1	transglutaminase domain-containing protein	57.1	79.9	27.4
MGA_1375	LOCUS_13690	sequence1:1521398..1521970(+)	partial			WP_011837678.1	membrane protein	69.5	66.7	36.1
MGA_1402	LOCUS_13960	sequence1:1548652..1551897(+)	partial			WP_011101323.1	MucBP domain-containing protein	40.4	44.7	32.6
MGA_1425	LOCUS_14190	sequence1:1572787..1573065(+)	partial			WP_012027608.1	membrane protein	100.0	65.7	89.1
MGA_1454	LOCUS_14480	sequence1:1600513..1600950(+)	partial			WP_156294863.1	IS3 family transposase	97.9	57.7	78.9
MGA_1505	LOCUS_14990	sequence1:1655505..1655738(-)	internal_stop_codon	1655406..1655408(-),1655505..1655507(-)		WP_002938864.1	GNAT family N-acetyltransferase	100.0	49.0	72.7
MGA_1537	LOCUS_15310	sequence1:1690094..1692601(-)	partial			WP_000700513.1	pneumococcal-type histidine triad protein	64.6	51.4	40.9
MGA_1549	LOCUS_15430	sequence1:1702461..1704143(-)	partial			WP_003854963.1	carboxylesterase/lipase family protein	39.8	40.5	41.7
MGA_1550	LOCUS_15440	sequence1:1704305..1704736(-)	frameshift		1704804	WP_002262843.1	beta-glucoside-specific PTS transporter subunit IIABC	100.0	22.2	68.5
MGA_1551	LOCUS_15450	sequence1:1704802..1706214(-)	frameshift		1704810	WP_002262843.1	beta-glucoside-specific PTS transporter subunit IIABC	99.4	73.6	55.5
MGA_1605	LOCUS_15990	sequence1:1761066..1761320(-)	partial			WP_009910805.1	acetolactate synthase small subunit	100.0	53.2	66.7
MGA_1610	LOCUS_16040	sequence1:1766129..1768894(+)	partial			WP_012775496.1	pneumococcal-type histidine triad protein	42.5	41.6	35.1
MGA_1614	LOCUS_16080	sequence1:1771035..1772195(-)	frameshift		1772224	WP_011109309.1	ATP-binding protein	95.9	78.4	36.2
MGA_1623	LOCUS_16170	sequence1:1779749..1780591(-)	partial			WP_012047606.1	phage replisome organizer N-terminal domain-containing protein	70.0	63.0	47.4
MGA_1625	LOCUS_16190	sequence1:1780977..1781531(+)	partial			WP_010707088.1	helix-turn-helix transcriptional regulator	44.6	25.3	36.6
MGA_1626	LOCUS_16200	sequence1:1781835..1782740(+)	internal_stop_codon	1781685..1781687(+)		WP_000022160.1	site-specific integrase	100.0	78.1	69.4
MGA_1628	LOCUS_16220	sequence1:1786063..1787745(-)	partial			WP_010951099.1	DNA methyltransferase	69.3	52.9	42.3
MGA_1631	LOCUS_16250	sequence1:1790177..1790491(+)	partial			WP_002919940.1	replication protein	93.3	48.3	62.9
MGA_1633	LOCUS_16270	sequence1:1790822..1791463(+)	frameshift,internal_stop_codon	1791591..1791593(+)	1791442	WP_000219078.1	site-specific integrase	98.1	51.5	62.9
MGA_1634	LOCUS_16280	sequence1:1791597..1792040(+)	frameshift,internal_stop_codon	1791591..1791593(+)	1791448	WP_205010568.1	tyrosine-type recombinase/integrase	100.0	36.3	75.5
MGA_1641	LOCUS_16350	sequence1:1796814..1797635(-)	partial			WP_074016730.1	GIY-YIG nuclease family protein	53.5	49.8	42.6
MGA_1681	LOCUS_16750	sequence1:1846979..1847473(-)	partial			WP_000730572.1	AAA family ATPase	98.2	46.0	52.5
MGA_1698	LOCUS_16920	sequence1:1867761..1868072(-)	partial			WP_000424404.1	hypothetical protein	89.3	73.5	43.2
MGA_1708	LOCUS_17020	sequence1:1875670..1875858(-)	frameshift		1875675	WP_048065538.1	IS5-like element ISMac15 family transposase	90.3	31.7	32.6
MGA_1716	LOCUS_17100	sequence1:1883814..1884227(-)	internal_stop_codon	1884231..1884233(-)		WP_012027872.1	phosphotransferase	99.3	47.2	69.1
MGA_1717	LOCUS_17110	sequence1:1884231..1884683(-)	internal_stop_codon	1884231..1884233(-)		WP_012027872.1	phosphotransferase	96.7	50.3	68.3
MGA_1727	LOCUS_17210	sequence1:1895874..1896053(-)	internal_stop_codon	1896147..1896149(-),1895874..1895876(-)		WP_009910909.1	DUF1697 domain-containing protein	96.6	32.4	75.4
MGA_1728	LOCUS_17220	sequence1:1896147..1896344(-)	internal_stop_codon	1896147..1896149(-),1895874..1895876(-)		WP_009910909.1	DUF1697 domain-containing protein	100.0	44.3	53.8
MGA_1761	LOCUS_17550	sequence1:1925217..1925762(-)	frameshift		1925815	WP_002903682.1	DUF4352 domain-containing protein	77.9	65.9	67.4
MGA_1768	LOCUS_17620	sequence1:1932449..1932637(+)	internal_stop_codon	1932635..1932637(+)		WP_014636530.1	hypothetical protein	93.5	63.7	63.8
MGA_1796	LOCUS_17900	sequence1:1974279..1977170(-)	partial			WP_000841404.1	fibronectin-binding protein FnbB	13.3	11.8	31.2
MGA_1820	LOCUS_18140	sequence1:2004983..2005747(-)	partial			WP_009039948.1	hypothetical protein	59.1	47.9	37.1
MGA_1827	LOCUS_18210	sequence1:2010755..2011054(+)	partial			WP_002268365.1	helix-turn-helix transcriptional regulator	84.8	72.6	50.6
MGA_1889	LOCUS_18830	sequence1:2084564..2086414(+)	partial			WP_012028056.1	YfhO family protein	99.8	71.7	76.0