{ "type": "genome", "identifier": "GCF_003610195.1", "organism": "Halopiger aswanensis", "title": "Halopiger aswanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003610195.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488555", "wgs_master": "RAPO00000000.1", "refseq_category": "reference genome", "taxid": "148449", "species_taxid": "148449", "organism_name": "Halopiger aswanensis", "infraspecific_name": "strain=DSM 13151", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM361019v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003610195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/195/GCF_003610195.1_ASM361019v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4865231", "genome_size_ungapped": "4865221", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003610195.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4712", "protein_coding_gene_count": "4580", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopiger aswanensis" ], "sample_taxid": [ "148449" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4865231", "Number of Sequences": "17", "Longest Sequences (bp)": "1465276", "N50 (bp)": "1426401", "Gap Ratio (%)": "0.000206", "GCcontent (%)": "64.4", "Number of CDSs": "4613", "Average Protein Length": "298.5", "Coding Ratio (%)": "84.9", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopiger aswanensis", "strain": "strain=DSM 13151", "accession": "GCA_003610195.1", "taxid": 148449, "species_taxid": 148449, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1613, "total_fragments": 1614, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halopiger xanaduensis", "strain": "strain=SH-6", "accession": "GCA_000217715.1", "taxid": 387343, "species_taxid": 387343, "relation_to_type": "type", "validated": true, "ani": 91.4158, "matched_fragments": 1253, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salina", "strain": "strain=JCM 13891", "accession": "GCA_000337495.1", "taxid": 504937, "species_taxid": 504937, "relation_to_type": "type", "validated": true, "ani": 82.7238, "matched_fragments": 946, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger salifodinae", "strain": "strain=KCY07-B2", "accession": "GCA_000784335.1", "taxid": 1202768, "species_taxid": 1202768, "relation_to_type": "type", "validated": true, "ani": 82.5624, "matched_fragments": 848, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salifodinae", "strain": "strain=ZY19", "accession": "GCA_003977755.1", "taxid": 2675099, "species_taxid": 2675099, "relation_to_type": "type", "validated": true, "ani": 82.5038, "matched_fragments": 932, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger salifodinae", "strain": "strain=CGMCC 1.12284", "accession": "GCA_900110455.1", "taxid": 1202768, "species_taxid": 1202768, "relation_to_type": "type", "validated": true, "ani": 82.4795, "matched_fragments": 861, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma haloterrestris", "strain": "strain=DSM 13078", "accession": "GCA_900112205.1", "taxid": 148448, "species_taxid": 148448, "relation_to_type": "type", "validated": true, "ani": 82.3638, "matched_fragments": 883, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma lacisalsi", "strain": "strain=AJ5", "accession": "GCA_000226975.3", "taxid": 229731, "species_taxid": 229731, "relation_to_type": "type", "validated": true, "ani": 82.2056, "matched_fragments": 888, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma lacisalsi", "strain": "strain=AJ5", "accession": "GCA_000336655.1", "taxid": 229731, "species_taxid": 229731, "relation_to_type": "type", "validated": true, "ani": 82.2, "matched_fragments": 868, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger goleimassiliensis", "strain": "strain=IIH3", "accession": "GCA_000455345.1", "taxid": 1293048, "species_taxid": 1293048, "relation_to_type": "type", "validated": true, "ani": 82.0813, "matched_fragments": 813, "total_fragments": 1614, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema amylolyticum", "strain": "strain=LT61", "accession": "GCA_020515625.1", "taxid": 2878679, "species_taxid": 2878679, 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