{
    "type": "genome",
    "identifier": "GCF_003610355.1",
    "organism": "Sphingobacterium detergens",
    "title": "Sphingobacterium detergens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003610355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09074751",
        "wgs_master": "RAPY00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1145106",
        "species_taxid": "1145106",
        "organism_name": "Sphingobacterium detergens",
        "infraspecific_name": "strain=CECT 7938",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/02",
        "asm_name": "ASM361035v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003610355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/355/GCF_003610355.1_ASM361035v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6733110",
        "genome_size_ungapped": "6732474",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003610355.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "5564",
        "protein_coding_gene_count": "5480",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-02",
    "dateModified": "2018-10-02",
    "datePublished": "2018-10-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobacterium detergens"
        ],
        "sample_taxid": [
            "1145106"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.913 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6733110",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "2827388",
        "N50 (bp)": "913634",
        "Gap Ratio (%)": "0.009446",
        "GCcontent (%)": "39.8",
        "Number of CDSs": "5470",
        "Average Protein Length": "358.2",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Sphingobacterium detergens",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
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                "species_taxid": 2420510,
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                "ani": 86.9449,
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                "status": "below_threshold"
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            {
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            {
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                "species_taxid": 2737006,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium paramultivorum",
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                "accession": "GCA_009660355.1",
                "taxid": 2886510,
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                "relation_to_type": "type",
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                "matched_fragments": 938,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium siyangense",
                "strain": "strain=CGMCC 1.6855",
                "accession": "GCA_007830445.1",
                "taxid": 459529,
                "species_taxid": 459529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.367,
                "matched_fragments": 851,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobacterium multivorum",
                "strain": "strain=NCTC11343",
                "accession": "GCA_900457465.1",
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                "species_taxid": 28454,
                "relation_to_type": "type",
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                "ani": 81.189,
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                "total_fragments": 2238,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002000245.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Sphingobacterium",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_003627955.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002933815.1",
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        ]
    },
    "_bac2feature": {
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}