{ "type": "genome", "identifier": "GCF_003610435.1", "organism": "Pseudorhodoplanes sinuspersici", "title": "Pseudorhodoplanes sinuspersici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003610435.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074966", "wgs_master": "RAQD00000000.1", "refseq_category": "na", "taxid": "1235591", "species_taxid": "1235591", "organism_name": "Pseudorhodoplanes sinuspersici", "infraspecific_name": "strain=CECT 8374", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM361043v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003610435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/435/GCF_003610435.1_ASM361043v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5963372", "genome_size_ungapped": "5963372", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003610435.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "5773", "protein_coding_gene_count": "5650", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodoplanes sinuspersici" ], "sample_taxid": [ "1235591" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.669 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5963372", "Number of Sequences": "16", "Longest Sequences (bp)": "2501567", "N50 (bp)": "1007672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "5744", "Average Protein Length": "302.0", "Coding Ratio (%)": "87.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=CECT 8374", "accession": "GCA_003610435.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia massiliensis", "strain": "strain=DSM 17498", "accession": "GCA_014203115.1", "taxid": 211460, "species_taxid": 211460, "relation_to_type": "type", "validated": true, "ani": 77.8328, "matched_fragments": 333, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.8213, "matched_fragments": 456, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_000379145.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.7744, "matched_fragments": 464, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 77.7243, "matched_fragments": 313, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=NBRC 14791", "accession": "GCA_006539665.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.7011, "matched_fragments": 454, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium septentrionale", "strain": "strain=1S1", "accession": "GCA_011516645.4", "taxid": 1404411, "species_taxid": 1404411, "relation_to_type": "type", "validated": true, "ani": 77.6727, "matched_fragments": 447, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 77.6714, "matched_fragments": 387, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 77.6477, "matched_fragments": 420, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 77.6425, "matched_fragments": 445, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 77.6349, "matched_fragments": 424, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afipia birgiae", "strain": "strain=34632", "accession": "GCA_000308295.2", "taxid": 151414, "species_taxid": 151414, "relation_to_type": "type", "validated": true, "ani": 77.6193, "matched_fragments": 319, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 77.6172, "matched_fragments": 428, "total_fragments": 1978, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, 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