{ "type": "genome", "identifier": "GCF_003610455.1", "organism": "Sulfitobacter guttiformis", "title": "Sulfitobacter guttiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003610455.1", "bioproject": "PRJNA224116", "biosample": "SAMN08776960", "wgs_master": "RAQK00000000.1", "refseq_category": "na", "taxid": "74349", "species_taxid": "74349", "organism_name": "Sulfitobacter guttiformis", "infraspecific_name": "strain=DSM 11458", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM361045v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003610455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/455/GCF_003610455.1_ASM361045v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3975823", "genome_size_ungapped": "3975823", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003610455.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3819", "protein_coding_gene_count": "3732", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfitobacter guttiformis" ], "sample_taxid": [ "74349" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica:East Antarctica, Ekho Lake, Vestfold Hills" ], "sample_host_location_id": [], "data_size": "1.131 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3975823", "Number of Sequences": "5", "Longest Sequences (bp)": "2587152", "N50 (bp)": "2587152", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "3818", "Average Protein Length": "307.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfitobacter guttiformis", "strain": "strain=DSM 11458", "accession": "GCA_003610455.1", "taxid": 74349, "species_taxid": 74349, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucicola", "strain": "strain=NB-77", "accession": "GCA_000622385.1", "taxid": 1342301, "species_taxid": 1342301, "relation_to_type": "type", "validated": true, "ani": 77.4709, "matched_fragments": 258, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter litoralis", "strain": "strain=DSM 17584", "accession": "GCA_900103185.1", "taxid": 335975, "species_taxid": 335975, "relation_to_type": "type", "validated": true, "ani": 77.4296, "matched_fragments": 217, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 77.4022, "matched_fragments": 258, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter marinus", "strain": "strain=DSM 23422", "accession": "GCA_900116285.1", "taxid": 394264, "species_taxid": 394264, "relation_to_type": "type", "validated": true, "ani": 77.4009, "matched_fragments": 236, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter geojensis", "strain": "strain=DSM 101063", "accession": "GCA_013407805.1", "taxid": 1342299, "species_taxid": 1342299, "relation_to_type": "type", "validated": true, "ani": 77.3608, "matched_fragments": 298, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter pontiacus", "strain": "strain=DSM 10014", "accession": "GCA_900106935.1", "taxid": 60137, "species_taxid": 60137, "relation_to_type": "type", "validated": true, "ani": 77.2723, "matched_fragments": 251, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.2389, "matched_fragments": 241, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=HEL-45", "accession": "GCA_000172095.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 77.0716, "matched_fragments": 234, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter sediminilitoris", "strain": "strain=JBTF-M27", "accession": "GCA_010667575.1", "taxid": 2698830, "species_taxid": 2698830, "relation_to_type": "type", "validated": true, "ani": 77.0543, "matched_fragments": 258, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 77.0465, "matched_fragments": 79, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter dubius", "strain": "strain=DSM 16472", "accession": "GCA_900113435.1", "taxid": 218673, "species_taxid": 218673, "relation_to_type": "type", "validated": true, "ani": 76.7928, "matched_fragments": 226, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.7274, "matched_fragments": 87, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.5533, "matched_fragments": 100, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium sediminis", "strain": "strain=DSM 29052", "accession": "GCA_900188035.1", "taxid": 1608407, "species_taxid": 1608407, "relation_to_type": "type", "validated": true, "ani": 76.5033, "matched_fragments": 147, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter multivorans", "strain": "strain=CECT 7557", "accession": "GCA_001458415.1", "taxid": 928856, "species_taxid": 928856, "relation_to_type": "type", "validated": true, "ani": 76.4681, "matched_fragments": 104, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, 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"total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003610455.1", "gtdb_species": "s__Sulfitobacter guttiformis", "ani": 100.0, "matched_fragments": 1323, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000622405.1", "gtdb_species": "s__Sulfitobacter donghicola", "ani": 78.1143, "matched_fragments": 357, "total_fragments": 1323, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 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