{ "type": "genome", "identifier": "GCF_003610635.1", "organism": "Ichthyenterobacterium magnum", "title": "Ichthyenterobacterium magnum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003610635.1", "bioproject": "PRJNA224116", "biosample": "SAMN06265172", "wgs_master": "RAQJ00000000.1", "refseq_category": "reference genome", "taxid": "1230530", "species_taxid": "1230530", "organism_name": "Ichthyenterobacterium magnum", "infraspecific_name": "strain=DSM 26283", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/02", "asm_name": "ASM361063v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003610635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/635/GCF_003610635.1_ASM361063v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3009115", "genome_size_ungapped": "3009062", "gc_percent": "31.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003610635.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2784", "protein_coding_gene_count": "2734", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-02", "dateModified": "2018-10-02", "datePublished": "2018-10-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Ichthyenterobacterium magnum" ], "sample_taxid": [ "1230530" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.829 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3009115", "Number of Sequences": "16", "Longest Sequences (bp)": "1291683", "N50 (bp)": "496483", "Gap Ratio (%)": "0.001761", "GCcontent (%)": "31.4", "Number of CDSs": "2746", "Average Protein Length": "331.1", "Coding Ratio (%)": "90.6", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Psychroserpens jangbogonensis", "strain": "strain=PAMC 27130", "accession": "GCA_000797465.1", "taxid": 1484460, "species_taxid": 1484460, "relation_to_type": "type", "validated": true, "ani": 79.1184, "matched_fragments": 434, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 78.8767, "matched_fragments": 391, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 78.8209, "matched_fragments": 417, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella endarachnes", "strain": "strain=HL2-2", "accession": "GCA_009741275.1", "taxid": 2681965, "species_taxid": 2681965, "relation_to_type": "type", "validated": true, "ani": 78.5704, "matched_fragments": 331, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 78.5662, "matched_fragments": 350, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 78.5575, "matched_fragments": 308, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 78.3056, "matched_fragments": 305, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 78.2678, "matched_fragments": 268, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=DSM 28133", "accession": "GCA_003315315.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 78.2481, "matched_fragments": 278, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 78.22, "matched_fragments": 281, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella undariae", "strain": "strain=CCUG 63832", "accession": "GCA_013285155.1", "taxid": 1285465, "species_taxid": 1285465, "relation_to_type": "type", "validated": true, "ani": 78.2091, "matched_fragments": 325, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera marina", "strain": "strain=NBU2968", "accession": "GCA_019880635.1", "taxid": 2873265, "species_taxid": 2873265, "relation_to_type": "type", "validated": true, "ani": 78.1892, "matched_fragments": 280, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 78.1686, "matched_fragments": 264, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ludwigii", "strain": "strain=HL116", "accession": "GCA_013403985.1", "taxid": 2686076, "species_taxid": 2686076, "relation_to_type": "type", "validated": true, "ani": 78.1606, "matched_fragments": 333, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 78.1603, "matched_fragments": 312, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia algoritergicola", "strain": "strain=APA-1", "accession": "GCA_008086165.1", "taxid": 291187, "species_taxid": 291187, "relation_to_type": "type", "validated": true, "ani": 78.0599, "matched_fragments": 264, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 77.9989, "matched_fragments": 295, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.976, "matched_fragments": 300, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 77.9739, "matched_fragments": 311, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella jejuensis", "strain": "strain=DSM 25330", "accession": "GCA_900129745.1", "taxid": 1089305, "species_taxid": 1089305, "relation_to_type": "type", "validated": true, "ani": 77.8205, "matched_fragments": 240, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.7892, "matched_fragments": 258, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.5947, "matched_fragments": 287, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 77.5097, "matched_fragments": 262, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter mikhailovii", "strain": "strain=KCTC 12710", "accession": "GCA_014651495.1", "taxid": 425498, "species_taxid": 425498, "relation_to_type": "type", "validated": true, "ani": 77.4103, "matched_fragments": 229, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003610635.1", "gtdb_species": "s__Ichthyenterobacterium magnum", "ani": 100.0, "matched_fragments": 992, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Ichthyenterobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014641635.1", "gtdb_species": "s__Aquaticitalea lipolytica", "ani": 79.1673, "matched_fragments": 458, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquaticitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000797465.1", "gtdb_species": "s__Psychroserpens jangbogonensis", "ani": 79.1196, "matched_fragments": 433, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000826655.1", "gtdb_species": "s__Psychroserpens damuponensis", "ani": 79.0044, "matched_fragments": 415, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002162685.1", "gtdb_species": "s__Psychroserpens sp002162685", "ani": 78.9724, "matched_fragments": 459, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004366715.1", "gtdb_species": "s__Meridianimaribacter flavus", "ani": 78.9566, "matched_fragments": 395, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Meridianimaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000826645.1", "gtdb_species": "s__Psychroserpens mesophilus", "ani": 78.8818, "matched_fragments": 390, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015319355.1", "gtdb_species": "s__Psychroserpens luteus", "ani": 78.7841, "matched_fragments": 446, 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