{ "type": "genome", "identifier": "GCF_003610785.1", "organism": "Micromonospora globbae", "title": "Micromonospora globbae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003610785.1", "bioproject": "PRJNA224116", "biosample": "SAMN10135987", "wgs_master": "RAQQ00000000.1", "refseq_category": "na", "taxid": "1894969", "species_taxid": "1894969", "organism_name": "Micromonospora globbae", "infraspecific_name": "strain=WPS1-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/03", "asm_name": "ASM361078v1", "asm_submitter": "Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan", "gbrs_paired_asm": "GCA_003610785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/610/785/GCF_003610785.1_ASM361078v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7087181", "genome_size_ungapped": "7087181", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003610785.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "6513", "protein_coding_gene_count": "6328", "non_coding_gene_count": "63", "pubmed_id": "29458491" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-03", "dateModified": "2018-10-03", "datePublished": "2018-10-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora globbae" ], "sample_taxid": [ "1894969" ], "sample_host_organism": [ "Globba winitii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7087181", "Number of Sequences": "96", "Longest Sequences (bp)": "556434", "N50 (bp)": "253779", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "6508", "Average Protein Length": "322.8", "Coding Ratio (%)": "88.9", "Number of rRNAs": "2", "Number of tRNAs": "70", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora globbae", "strain": "strain=WPS1-2", "accession": "GCA_003610785.1", "taxid": 1894969, "species_taxid": 1894969, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2310, "total_fragments": 2313, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora costi", "strain": "strain=CS1-12", "accession": "GCA_003626655.1", "taxid": 1530042, "species_taxid": 1530042, "relation_to_type": "type", "validated": true, "ani": 87.7805, "matched_fragments": 1746, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora musae", "strain": "strain=MS1-9", "accession": "GCA_003626635.1", "taxid": 1894970, "species_taxid": 1894970, "relation_to_type": "type", "validated": true, "ani": 86.933, "matched_fragments": 1652, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora avicenniae", "strain": "strain=DSM 45758", "accession": "GCA_900156065.1", "taxid": 1198245, "species_taxid": 1198245, "relation_to_type": "type", "validated": true, "ani": 86.8873, "matched_fragments": 1618, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 86.2597, "matched_fragments": 1628, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 85.919, "matched_fragments": 1631, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 85.5132, "matched_fragments": 1218, 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95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 84.478, "matched_fragments": 1442, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora noduli", "strain": "strain=GUI43", "accession": "GCA_003264365.1", "taxid": 709876, "species_taxid": 709876, "relation_to_type": "type", "validated": true, "ani": 84.1911, "matched_fragments": 1436, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 84.1178, "matched_fragments": 1391, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.522, "matched_fragments": 1338, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.1498, "matched_fragments": 1272, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003610785.1", "gtdb_species": "s__Micromonospora globbae", "ani": 100.0, "matched_fragments": 2310, "total_fragments": 2313, "gtdb_taxonomy": 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