{ "type": "genome", "identifier": "GCF_003611585.1", "organism": "Corallococcus exercitus", "title": "Corallococcus exercitus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aberystwyth University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003611585.1", "bioproject": "PRJNA224116", "biosample": "SAMN10026050", "wgs_master": "RAVW00000000.1", "refseq_category": "reference genome", "taxid": "2316736", "species_taxid": "2316736", "organism_name": "Corallococcus exercitus", "infraspecific_name": "strain=AB043A", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/04", "asm_name": "ASM361158v1", "asm_submitter": "Aberystwyth University", "gbrs_paired_asm": "GCA_003611585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/611/585/GCF_003611585.1_ASM361158v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10148184", "genome_size_ungapped": "10148184", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "961", "contig_count": "961", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003611585.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "8560", "protein_coding_gene_count": "8206", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-04", "dateModified": "2018-10-04", "datePublished": "2018-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Corallococcus exercitus" ], "sample_taxid": [ "2316736" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "2.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10148184", "Number of Sequences": "961", "Longest Sequences (bp)": "87382", "N50 (bp)": "19246", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "7702", "Average Protein Length": "352.2", "Coding Ratio (%)": "80.2", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2923, "total_fragments": 2959, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, "species_taxid": 2316728, "relation_to_type": "type", "validated": true, "ani": 93.2453, "matched_fragments": 2443, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 93.1118, "matched_fragments": 2354, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus coralloides", "strain": "strain=DSM 2259", "accession": "GCA_000255295.1", "taxid": 184914, "species_taxid": 184914, "relation_to_type": "type", "validated": true, "ani": 92.5183, "matched_fragments": 2475, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 92.3115, "matched_fragments": 2402, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exiguus", "strain": "strain=DSM 14696", "accession": "GCA_009909105.1", "taxid": 83462, "species_taxid": 83462, "relation_to_type": "type", "validated": true, "ani": 92.2415, "matched_fragments": 2507, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 90.2114, "matched_fragments": 2173, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 88.822, "matched_fragments": 2237, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 80.0335, "matched_fragments": 1428, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 80.0311, "matched_fragments": 1471, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 76.0726, "matched_fragments": 458, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.3014, "matched_fragments": 367, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.2773, "matched_fragments": 372, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.2669, "matched_fragments": 375, "total_fragments": 2959, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003611585.1", "gtdb_species": "s__Corallococcus exercitus", "ani": 100.0, "matched_fragments": 2923, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.08", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_017302985.1", "gtdb_species": "s__Corallococcus macrosporus_A", "ani": 93.9595, "matched_fragments": 2541, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611695.1", "gtdb_species": "s__Corallococcus carmarthensis", "ani": 93.249, "matched_fragments": 2442, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003612165.1", "gtdb_species": "s__Corallococcus aberystwythensis", "ani": 93.0994, "matched_fragments": 2356, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000255295.1", "gtdb_species": "s__Corallococcus coralloides", "ani": 92.4765, "matched_fragments": 2481, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.87", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003668875.1", "gtdb_species": "s__Corallococcus interemptor", "ani": 92.3084, "matched_fragments": 2402, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017309135.1", "gtdb_species": "s__Corallococcus sp017309135", "ani": 92.2891, "matched_fragments": 2454, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009909105.1", "gtdb_species": "s__Corallococcus exiguus", "ani": 92.2743, "matched_fragments": 2501, "total_fragments": 2959, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Myxococcaceae;g__Corallococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.29", "min_intra_species_ani": "96.40", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 16, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.477, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 10080614.25, "gc_content": 69.9, "coding_genes": 7941.0, "rRNA16S_genes": 3.0, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Corallococcus", "exercitus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }