{ "type": "genome", "identifier": "GCF_003611695.1", "organism": "Corallococcus carmarthensis", "title": "Corallococcus carmarthensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Aberystwyth University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003611695.1", "bioproject": "PRJNA224116", "biosample": "SAMN10026042", "wgs_master": "RAWE00000000.1", "refseq_category": "reference genome", "taxid": "2316728", "species_taxid": "2316728", "organism_name": "Corallococcus carmarthensis", "infraspecific_name": "strain=CA043D", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/04", "asm_name": "ASM361169v1", "asm_submitter": "Aberystwyth University", "gbrs_paired_asm": "GCA_003611695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/611/695/GCF_003611695.1_ASM361169v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10793792", "genome_size_ungapped": "10793792", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "530", "contig_count": "530", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003611695.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "8979", "protein_coding_gene_count": "8722", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-04", "dateModified": "2018-10-04", "datePublished": "2018-10-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Corallococcus carmarthensis" ], "sample_taxid": [ "2316728" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "2.934 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10793792", "Number of Sequences": "530", "Longest Sequences (bp)": "169372", "N50 (bp)": "37418", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.9", "Number of CDSs": "8586", "Average Protein Length": "359.7", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, "species_taxid": 2316728, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3322, "total_fragments": 3346, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 93.1775, "matched_fragments": 2424, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 93.1342, "matched_fragments": 2505, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus coralloides", "strain": "strain=DSM 2259", "accession": "GCA_000255295.1", "taxid": 184914, "species_taxid": 184914, "relation_to_type": "type", "validated": true, "ani": 92.5415, "matched_fragments": 2689, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exiguus", "strain": "strain=DSM 14696", "accession": "GCA_009909105.1", "taxid": 83462, "species_taxid": 83462, "relation_to_type": "type", "validated": true, "ani": 92.361, "matched_fragments": 2782, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 92.0504, "matched_fragments": 2519, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 90.1769, "matched_fragments": 2380, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 88.639, "matched_fragments": 2398, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 79.9877, "matched_fragments": 1486, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium violaceum", "strain": "strain=Cb vi76", "accession": "GCA_000733295.1", "taxid": 83451, "species_taxid": 83451, "relation_to_type": "type", "validated": true, "ani": 79.8694, "matched_fragments": 1482, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.9909, "matched_fragments": 492, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 74.8585, "matched_fragments": 102, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 74.8531, "matched_fragments": 103, "total_fragments": 3346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_000024265.1", "taxid": 84112, "species_taxid": 84112, 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