{ "type": "genome", "identifier": "GCF_003614885.1", "organism": "Photobacterium salinisoli", "title": "Photobacterium salinisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Agricultural Resources and Regional Planning, Chinese Academyof Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003614885.1", "bioproject": "PRJNA224116", "biosample": "SAMN10102126", "wgs_master": "QZMS00000000.1", "refseq_category": "reference genome", "taxid": "1616783", "species_taxid": "1616783", "organism_name": "Photobacterium salinisoli", "infraspecific_name": "strain=LAM9072", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/05", "asm_name": "ASM361488v1", "asm_submitter": "Institute of Agricultural Resources and Regional Planning, Chinese Academyof Agricultural Sciences", "gbrs_paired_asm": "GCA_003614885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/614/885/GCF_003614885.1_ASM361488v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4736655", "genome_size_ungapped": "4736655", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003614885.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4399", "protein_coding_gene_count": "4243", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-05", "dateModified": "2018-10-05", "datePublished": "2018-10-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Photobacterium salinisoli" ], "sample_taxid": [ "1616783" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shandong Province, Lingxian County" ], "sample_host_location_id": [], "data_size": "1.346 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4736655", "Number of Sequences": "26", "Longest Sequences (bp)": "2318054", "N50 (bp)": "1427710", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.2", "Number of CDSs": "4333", "Average Protein Length": "315.6", "Coding Ratio (%)": "86.6", "Number of rRNAs": "6", "Number of tRNAs": "96", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Photobacterium salinisoli", "strain": "strain=LAM9072", "accession": "GCA_003614885.1", "taxid": 1616783, "species_taxid": 1616783, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1566, "total_fragments": 1568, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Photobacterium halotolerans", "strain": "strain=DSM 18316", "accession": "GCA_000425165.1", "taxid": 265726, "species_taxid": 265726, "relation_to_type": "type", "validated": true, "ani": 91.2777, "matched_fragments": 1369, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium arenosum", "strain": "strain=CAU 1568", "accession": "GCA_014841115.1", "taxid": 2774143, "species_taxid": 2774143, "relation_to_type": "type", "validated": true, "ani": 91.2357, "matched_fragments": 1358, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=S2753", "accession": "GCA_000695255.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 81.5867, "matched_fragments": 721, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium galatheae", "strain": "strain=DSM 100496", "accession": "GCA_023653475.1", "taxid": 1654360, "species_taxid": 1654360, "relation_to_type": "type", "validated": true, "ani": 81.4205, "matched_fragments": 877, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium ganghwense", "strain": "strain=JCM 12487", "accession": "GCA_003025595.1", "taxid": 320778, "species_taxid": 320778, "relation_to_type": "type", "validated": true, "ani": 79.0354, "matched_fragments": 384, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 78.139, "matched_fragments": 72, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=CIP 101886", "accession": "GCA_000176515.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 78.0179, "matched_fragments": 193, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 76.743, "matched_fragments": 90, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 76.4607, "matched_fragments": 64, "total_fragments": 1568, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003614885.1", "gtdb_species": "s__Photobacterium sp003614885", "ani": 100.0, "matched_fragments": 1566, "total_fragments": 1568, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000972145.1", "gtdb_species": "s__Photobacterium halotolerans_A", "ani": 91.5306, "matched_fragments": 1387, "total_fragments": 1568, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium", "ani_circumscription_radius": 95.0, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }