{ "type": "genome", "identifier": "GCF_003614975.1", "organism": "Rahnella bruchi", "title": "Rahnella bruchi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003614975.1", "bioproject": "PRJNA224116", "biosample": "SAMN10095204", "wgs_master": "QZWI00000000.1", "refseq_category": "reference genome", "taxid": "1510573", "species_taxid": "1510573", "organism_name": "Rahnella bruchi", "infraspecific_name": "strain=DSM 27398", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/05", "asm_name": "ASM361497v1", "asm_submitter": "Institut Pasteur", "gbrs_paired_asm": "GCA_003614975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/614/975/GCF_003614975.1_ASM361497v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5501702", "genome_size_ungapped": "5501702", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003614975.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "5026", "protein_coding_gene_count": "4853", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-05", "dateModified": "2018-10-05", "datePublished": "2018-10-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Rahnella bruchi" ], "sample_taxid": [ "1510573" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.561 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5501702", "Number of Sequences": "63", "Longest Sequences (bp)": "1134684", "N50 (bp)": "215251", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.9", "Number of CDSs": "4935", "Average Protein Length": "321.8", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rahnella bruchi", "strain": "strain=DSM 27398", "accession": "GCA_003614975.1", "taxid": 1510573, "species_taxid": 1510573, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1805, "total_fragments": 1807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rahnella ecdela", "strain": "strain=FRB 231", "accession": "GCA_019049625.1", "taxid": 2816250, "species_taxid": 2816250, "relation_to_type": "type", "validated": true, "ani": 93.8777, "matched_fragments": 1601, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella woolbedingensis", "strain": "strain=DSM 27399", "accession": "GCA_003602095.1", "taxid": 1510574, "species_taxid": 1510574, "relation_to_type": "type", "validated": true, "ani": 93.5959, "matched_fragments": 1485, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella variigena", "strain": "strain=CIP 105588", "accession": "GCA_003602185.1", "taxid": 574964, "species_taxid": 574964, "relation_to_type": "type", "validated": true, "ani": 90.9646, "matched_fragments": 1420, "total_fragments": 1807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella variigena", "strain": 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