{ "type": "genome", "identifier": "GCF_003626595.1", "organism": "Micromonospora endolithica", "title": "Micromonospora endolithica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003626595.1", "bioproject": "PRJNA224116", "biosample": "SAMN10141349", "wgs_master": "RBAK00000000.1", "refseq_category": "na", "taxid": "230091", "species_taxid": "230091", "organism_name": "Micromonospora endolithica", "infraspecific_name": "strain=JCM 12677", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/07", "asm_name": "ASM362659v1", "asm_submitter": "Japan Collection of Microorganisms, Microbe Division, RIKEN BioResources Center, Tsukuba, Japan", "gbrs_paired_asm": "GCA_003626595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/626/595/GCF_003626595.1_ASM362659v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6971005", "genome_size_ungapped": "6970905", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003626595.1-RS_2024_03_21", "annotation_date": "2024-03-21", "total_gene_count": "6527", "protein_coding_gene_count": "6352", "non_coding_gene_count": "66", "pubmed_id": "15046305" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-07", "dateModified": "2018-10-07", "datePublished": "2018-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora endolithica" ], "sample_taxid": [ "230091" ], "sample_host_organism": [ "Rock" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: antarctic ocean" ], "sample_host_location_id": [], "data_size": "1.849 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6971005", "Number of Sequences": "40", "Longest Sequences (bp)": "1281760", "N50 (bp)": "422612", "Gap Ratio (%)": "0.001435", "GCcontent (%)": "72.5", "Number of CDSs": "6527", "Average Protein Length": "316.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora endolithica", "strain": "strain=JCM 12677", "accession": 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85.167, "matched_fragments": 1298, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 85.15, "matched_fragments": 1363, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rhizosphaerae", "strain": "strain=DSM 45431", "accession": "GCA_900091465.1", "taxid": 568872, "species_taxid": 568872, "relation_to_type": "type", "validated": true, "ani": 84.8071, "matched_fragments": 1311, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora globispora", "strain": "strain=S2901", "accession": "GCA_003857015.1", "taxid": 1450148, "species_taxid": 1450148, "relation_to_type": "type", "validated": true, "ani": 84.8042, "matched_fragments": 1105, 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95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 84.5924, "matched_fragments": 1385, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 84.5746, "matched_fragments": 1445, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craterilacus", "strain": "strain=NA12", "accession": "GCA_003236315.1", "taxid": 1655439, "species_taxid": 1655439, "relation_to_type": "type", "validated": true, "ani": 84.558, "matched_fragments": 1244, "total_fragments": 2304, "ani_threshold": 95, "status": "below_threshold" }, { 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