{ "type": "genome", "identifier": "GCF_003626895.1", "organism": "Nocardia yunnanensis", "title": "Nocardia yunnanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Henan Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003626895.1", "bioproject": "PRJNA224116", "biosample": "SAMN10135935", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2382165", "species_taxid": "2382165", "organism_name": "Nocardia yunnanensis", "infraspecific_name": "strain=CFH S0054", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/07", "asm_name": "ASM362689v1", "asm_submitter": "Henan Normal University", "gbrs_paired_asm": "GCA_003626895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/626/895/GCF_003626895.1_ASM362689v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7931441", "genome_size_ungapped": "7931321", "gc_percent": "68.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003626895.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7565", "protein_coding_gene_count": "7345", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-07", "dateModified": "2018-10-07", "datePublished": "2018-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardia yunnanensis" ], "sample_taxid": [ "2382165" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yunnan" ], "sample_host_location_id": [], "data_size": "2.156 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7931441", "Number of Sequences": "1", "Longest Sequences (bp)": "7931441", "N50 (bp)": "7931441", "Gap Ratio (%)": "0.001513", "GCcontent (%)": "68.4", "Number of CDSs": "7631", "Average Protein Length": "310.3", "Coding Ratio (%)": "89.6", "Number of rRNAs": "7", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardia yunnanensis", "strain": "strain=CFH S0054", "accession": "GCA_003626895.1", "taxid": 2382165, "species_taxid": 2382165, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2643, "total_fragments": 2643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardia concava", "strain": "strain=NBRC 100430", "accession": "GCA_000308815.1", "taxid": 257281, "species_taxid": 257281, "relation_to_type": "type", "validated": true, "ani": 87.4139, "matched_fragments": 1931, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia seriolae", "strain": "strain=NBRC 15557", "accession": "GCA_007990715.1", "taxid": 37332, "species_taxid": 37332, "relation_to_type": "type", "validated": true, "ani": 87.3695, "matched_fragments": 1782, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia terrae", "strain": "strain=ET3-3", "accession": "GCA_009760405.1", "taxid": 2675851, "species_taxid": 2675851, "relation_to_type": "type", "validated": true, "ani": 87.1921, "matched_fragments": 2008, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia niigatensis", "strain": "strain=NBRC 100131", "accession": "GCA_000308655.1", "taxid": 209249, "species_taxid": 209249, "relation_to_type": "type", "validated": true, "ani": 86.6692, "matched_fragments": 1800, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia tengchongensis", "strain": "strain=CFH S0057", "accession": "GCA_018362975.1", "taxid": 2055889, "species_taxid": 2055889, "relation_to_type": "type", "validated": true, "ani": 86.2382, "matched_fragments": 1793, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia yamanashiensis", "strain": "strain=NBRC 100130", "accession": "GCA_001613325.1", "taxid": 209247, "species_taxid": 209247, "relation_to_type": "type", "validated": true, "ani": 83.6042, "matched_fragments": 1673, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia inohanensis", "strain": "strain=NBRC 100128", "accession": "GCA_001612945.1", "taxid": 209246, "species_taxid": 209246, "relation_to_type": "type", "validated": true, "ani": 83.3127, "matched_fragments": 1636, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003626895.1", "gtdb_species": "s__Nocardia yunnanensis", "ani": 100.0, "matched_fragments": 2643, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000308815.1", "gtdb_species": "s__Nocardia concava", "ani": 87.4289, "matched_fragments": 1929, "total_fragments": 2643, "gtdb_taxonomy": 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