{ "type": "genome", "identifier": "GCF_003627035.1", "organism": "Apilactobacillus bombintestini", "title": "Apilactobacillus bombintestini", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003627035.1", "bioproject": "PRJNA224116", "biosample": "SAMN10141030", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2419772", "species_taxid": "2419772", "organism_name": "Apilactobacillus bombintestini", "infraspecific_name": "strain=BHWM-4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/07", "asm_name": "ASM362703v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_003627035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/627/035/GCF_003627035.1_ASM362703v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1289211", "genome_size_ungapped": "1289211", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003627035.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "1241", "protein_coding_gene_count": "1155", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-07", "dateModified": "2018-10-07", "datePublished": "2018-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Apilactobacillus bombintestini" ], "sample_taxid": [ "2419772" ], "sample_host_organism": [ "Bombus ignitus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeonju" ], "sample_host_location_id": [], "data_size": "0.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1289211", "Number of Sequences": "1", "Longest Sequences (bp)": "1289211", "N50 (bp)": "1289211", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.1", "Number of CDSs": "1171", "Average Protein Length": "323.2", "Coding Ratio (%)": "88.1", "Number of rRNAs": "15", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Apilactobacillus bombintestini", "strain": "strain=BHWM-4", "accession": "GCA_003627035.1", "taxid": 2419772, 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80.182, "matched_fragments": 199, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus micheneri", "strain": "strain=Hlig3", "accession": "GCA_002993975.1", "taxid": 1899430, "species_taxid": 1899430, "relation_to_type": "type", "validated": true, "ani": 80.0423, "matched_fragments": 220, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus timberlakei", "strain": "strain=HV_12", "accession": "GCA_002993965.1", "taxid": 2008380, "species_taxid": 2008380, "relation_to_type": "type", "validated": true, "ani": 79.9445, "matched_fragments": 200, "total_fragments": 429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Apilactobacillus xinyiensis", "strain": "strain=F575-4", "accession": "GCA_019656235.1", "taxid": 2841032, "species_taxid": 2841032, "relation_to_type": "type", "validated": true, "ani": 78.6037, "matched_fragments": 145, 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