{ "type": "genome", "identifier": "GCF_003627155.1", "organism": "Streptococcus gwangjuense", "title": "Streptococcus gwangjuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korean Collection for Oral Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003627155.1", "bioproject": "PRJNA224116", "biosample": "SAMN10135937", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1433513", "species_taxid": "1433513", "organism_name": "Streptococcus gwangjuense", "infraspecific_name": "strain=KCOM 1679 (=ChDC B345)", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/07", "asm_name": "ASM362715v1", "asm_submitter": "Korean Collection for Oral Microbiology", "gbrs_paired_asm": "GCA_003627155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/627/155/GCF_003627155.1_ASM362715v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1972481", "genome_size_ungapped": "1972481", "gc_percent": "40.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003627155.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "1941", "protein_coding_gene_count": "1812", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-07", "dateModified": "2018-10-07", "datePublished": "2018-10-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus gwangjuense" ], "sample_taxid": [ "1433513" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Pericoronitis" ], "sample_host_disease_id": [], "sample_host_location": [ "Korea: Gwangju" ], "sample_host_location_id": [], "data_size": "0.552 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1972481", "Number of Sequences": "1", "Longest Sequences (bp)": "1972481", "N50 (bp)": "1972481", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "1850", "Average Protein Length": "315.4", "Coding Ratio (%)": "88.7", "Number of rRNAs": "12", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 654, "total_fragments": 657, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 94.5514, "matched_fragments": 544, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 94.5374, "matched_fragments": 535, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 94.3124, "matched_fragments": 554, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=FDAARGOS 1456", "accession": "GCA_019047825.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.737, "matched_fragments": 512, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC12261", "accession": "GCA_900459425.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.7272, "matched_fragments": 506, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=NCTC 12261", "accession": "GCA_000148585.3", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.6432, "matched_fragments": 514, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus mitis", "strain": "strain=CCUG 31611", "accession": "GCA_002014755.1", "taxid": 28037, "species_taxid": 28037, "relation_to_type": "suspected-type", "validated": true, "ani": 93.4851, "matched_fragments": 514, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 93.0259, "matched_fragments": 524, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 92.2385, "matched_fragments": 509, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=CCUG 49455", "accession": "GCA_002087075.1", "taxid": 257758, "species_taxid": 257758, "relation_to_type": "type", "validated": true, "ani": 91.8693, "matched_fragments": 476, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 91.3232, "matched_fragments": 471, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 91.1944, "matched_fragments": 490, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 87.1662, "matched_fragments": 486, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6426, "matched_fragments": 130, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.0471, "matched_fragments": 104, "total_fragments": 657, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003627155.1", "gtdb_species": "s__Streptococcus gwangjuense", "ani": 100.0, "matched_fragments": 654, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006385165.1", "gtdb_species": "s__Streptococcus symci", "ani": 94.5439, "matched_fragments": 535, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.44", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.78", "num_clustered_genomes": 21, "status": "-" }, { "accession": "GCA_000385835.1", "gtdb_species": "s__Streptococcus mitis_AI", "ani": 94.4663, "matched_fragments": 522, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016658865.1", "gtdb_species": "s__Streptococcus mitis_BT", "ani": 94.3488, "matched_fragments": 557, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003626515.1", "gtdb_species": "s__Streptococcus chosunense", "ani": 94.3124, "matched_fragments": 554, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.51", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003942765.1", "gtdb_species": "s__Streptococcus mitis_BE", "ani": 94.2496, "matched_fragments": 538, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.27", "min_intra_species_ani": "95.27", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002096815.1", "gtdb_species": "s__Streptococcus mitis_AD", "ani": 94.0773, "matched_fragments": 541, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905369855.1", "gtdb_species": "s__Streptococcus oralis_BN", "ani": 93.7129, "matched_fragments": 365, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003942865.1", "gtdb_species": "s__Streptococcus mitis_BI", "ani": 93.5339, "matched_fragments": 535, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002096925.1", "gtdb_species": "s__Streptococcus mitis_AF", "ani": 93.4075, "matched_fragments": 503, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905221155.1", "gtdb_species": "s__Streptococcus sp905221155", "ani": 93.4057, "matched_fragments": 502, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002096755.1", "gtdb_species": "s__Streptococcus mitis_AC", "ani": 93.3033, "matched_fragments": 489, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.32", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_905187535.1", "gtdb_species": "s__Streptococcus mitis_BS", "ani": 93.2388, "matched_fragments": 510, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000220045.1", "gtdb_species": "s__Streptococcus mitis_AP", "ani": 93.2283, "matched_fragments": 506, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005144795.1", "gtdb_species": "s__Streptococcus mitis_BB", "ani": 93.154, "matched_fragments": 516, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.49", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002005545.1", "gtdb_species": "s__Streptococcus mitis_I", "ani": 92.8657, "matched_fragments": 508, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.10", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002860905.1", "gtdb_species": "s__Streptococcus oralis_BA", "ani": 92.8344, "matched_fragments": 499, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002860865.1", "gtdb_species": "s__Streptococcus mitis_AT", "ani": 92.8053, "matched_fragments": 512, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.74", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000148545.1", "gtdb_species": "s__Streptococcus mitis_C", "ani": 92.6801, "matched_fragments": 463, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.02", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_903645285.1", "gtdb_species": "s__Streptococcus sp903645285", "ani": 92.3332, "matched_fragments": 488, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.16", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905221205.1", "gtdb_species": "s__Streptococcus sp905221205", "ani": 92.1228, "matched_fragments": 496, "total_fragments": 657, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.157, "cell_length": -0.167, "doubling_h": -0.216, "growth_tmp": 36.667, "optimum_tmp": 36.284, "optimum_ph": 6.89, "genome_size": 2093253.959, "gc_content": 39.262, "coding_genes": 1944.968, "rRNA16S_genes": 4.791, "tRNA_genes": 62.087, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.285, "facultative_respiration": 0.337, "anaerobic_respiration": 0.146, "aerobic_respiration": 0.516, "mesophilic_range_tmp": 0.969, "thermophilic_range_tmp": 0.03, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.943, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.056, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "gwangjuense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }