{ "type": "genome", "identifier": "GCF_003628145.1", "organism": "Trinickia fusca", "title": "Trinickia fusca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003628145.1", "bioproject": "PRJNA224116", "biosample": "SAMN10142602", "wgs_master": "RBZV00000000.1", "refseq_category": "reference genome", "taxid": "2419777", "species_taxid": "2419777", "organism_name": "Trinickia fusca", "infraspecific_name": "strain=7MK8-2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM362814v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003628145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/628/145/GCF_003628145.1_ASM362814v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6104960", "genome_size_ungapped": "6103620", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003628145.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5426", "protein_coding_gene_count": "5300", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Trinickia fusca" ], "sample_taxid": [ "2419777" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.689 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6104960", "Number of Sequences": "41", "Longest Sequences (bp)": "1085905", "N50 (bp)": "496967", "Gap Ratio (%)": "0.021949", "GCcontent (%)": "63.5", "Number of CDSs": "5318", "Average Protein Length": "331.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Trinickia dinghuensis", "strain": "strain=DHOM06", "accession": "GCA_003367175.1", "taxid": 2291023, "species_taxid": 2291023, "relation_to_type": "type", "validated": true, "ani": 82.1206, "matched_fragments": 963, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000286555.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 81.8695, "matched_fragments": 747, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=NCTC13007", "accession": "GCA_900446205.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 81.8597, "matched_fragments": 859, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 81.7938, "matched_fragments": 863, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 81.6155, "matched_fragments": 916, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 81.612, "matched_fragments": 961, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5932, "matched_fragments": 858, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=LMG 23618", "accession": "GCA_900608545.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 81.5475, "matched_fragments": 924, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=WRAIR 286", "accession": "GCA_006538545.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 81.5026, "matched_fragments": 904, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264; ATCC 700388", "accession": "GCA_000012365.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 81.4979, "matched_fragments": 904, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264", "accession": "GCA_003568605.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 81.4756, "matched_fragments": 897, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mallei", "strain": "strain=ATCC 23344", "accession": "GCA_000011705.1", "taxid": 13373, "species_taxid": 13373, "relation_to_type": "type", "validated": true, "ani": 81.468, "matched_fragments": 854, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia mayonis", "strain": "strain=BDU6", "accession": "GCA_001523745.2", "taxid": 1385591, "species_taxid": 1385591, "relation_to_type": "type", "validated": true, "ani": 81.4426, "matched_fragments": 880, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia soli", "strain": "strain=LMG 24076", "accession": "GCA_902859815.1", "taxid": 380675, "species_taxid": 380675, "relation_to_type": "type", "validated": true, "ani": 81.4055, "matched_fragments": 920, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomallei", "strain": "strain=ATCC 23343", "accession": "GCA_001182285.1", "taxid": 28450, "species_taxid": 28450, "relation_to_type": "type", "validated": true, "ani": 81.4016, "matched_fragments": 934, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia soli", "strain": "strain=GP25-8", "accession": "GCA_002879855.1", "taxid": 380675, "species_taxid": 380675, "relation_to_type": "type", "validated": true, "ani": 81.3977, "matched_fragments": 914, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=ATCC 700388", "accession": "GCA_000152285.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 81.3969, "matched_fragments": 844, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia latens", "strain": "", "accession": "GCA_902499045.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3433, "matched_fragments": 860, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia diaoshuihuensis", "strain": "strain=NEAU-SY24", "accession": "GCA_003390925.1", "taxid": 2292265, "species_taxid": 2292265, "relation_to_type": "type", "validated": true, "ani": 81.3291, "matched_fragments": 896, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=TNe-841", "accession": "GCA_900104845.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 81.3083, "matched_fragments": 876, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia dabaoshanensis", "strain": "strain=GIMN1.004", "accession": "GCA_002879885.1", "taxid": 564714, "species_taxid": 564714, "relation_to_type": "type", "validated": true, "ani": 81.3073, "matched_fragments": 954, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia latens", "strain": "strain=CCUG 54555", "accession": "GCA_008802135.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3043, "matched_fragments": 842, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=LMG 26416", "accession": "GCA_900109675.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 81.2715, "matched_fragments": 859, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1876, "matched_fragments": 885, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia symbiotica", "strain": "strain=JPY-345", "accession": "GCA_002934455.1", "taxid": 863227, "species_taxid": 863227, "relation_to_type": "type", "validated": true, "ani": 81.1833, "matched_fragments": 839, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 80.7914, "matched_fragments": 916, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 80.7101, "matched_fragments": 744, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003628145.1", "gtdb_species": "s__Trinickia fusca", "ani": 100.0, "matched_fragments": 2016, "total_fragments": 2017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_017315705.1", "gtdb_species": "s__Trinickia sp017315705", "ani": 82.2312, "matched_fragments": 914, "total_fragments": 2017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005280735.1", "gtdb_species": "s__Trinickia sp005280735", "ani": 82.1762, "matched_fragments": 1009, "total_fragments": 2017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003367175.1", "gtdb_species": "s__Trinickia dinghuensis", "ani": 82.1286, "matched_fragments": 962, "total_fragments": 2017, "gtdb_taxonomy": 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