{ "type": "genome", "identifier": "GCF_003628435.1", "organism": "Lysinibacillus endophyticus", "title": "Lysinibacillus endophyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003628435.1", "bioproject": "PRJNA224116", "biosample": "SAMN10172205", "wgs_master": "RBZN00000000.1", "refseq_category": "na", "taxid": "1978490", "species_taxid": "1978490", "organism_name": "Lysinibacillus endophyticus", "infraspecific_name": "strain=DSM 100506", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM362843v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003628435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/628/435/GCF_003628435.1_ASM362843v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3534833", "genome_size_ungapped": "3534736", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003628435.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "3531", "protein_coding_gene_count": "3392", "non_coding_gene_count": "105", "pubmed_id": "27401830" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysinibacillus endophyticus" ], "sample_taxid": [ "1978490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Helongjiang Province" ], "sample_host_location_id": [], "data_size": "0.999 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3534833", "Number of Sequences": "123", "Longest Sequences (bp)": "269158", "N50 (bp)": "67386", "Gap Ratio (%)": "0.002744", "GCcontent (%)": "35.0", "Number of CDSs": "3464", "Average Protein Length": "286.8", "Coding Ratio (%)": "84.3", "Number of rRNAs": "6", "Number of tRNAs": "86", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ureibacillus chungkukjangi", "strain": "strain=2RL32", "accession": "GCA_003049615.1", "taxid": 1202712, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus sphaericus", "strain": "strain=NBRC 15095", "accession": "GCA_006539805.1", "taxid": 1421, "species_taxid": 1421, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4436, "matched_fragments": 228, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus varians", "strain": "strain=NBRC 109424", "accession": "GCA_005217815.1", "taxid": 1145276, "species_taxid": 1145276, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4325, "matched_fragments": 235, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus varians", "strain": "strain=GY32", "accession": "GCA_000600105.1", "taxid": 1145276, "species_taxid": 1145276, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3689, "matched_fragments": 232, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus mangiferihumi", "strain": "strain=CCTCC AB 2010389", "accession": "GCA_005217845.1", "taxid": 1130819, "species_taxid": 1130819, "relation_to_type": "type", "validated": true, "ani": 78.3195, "matched_fragments": 234, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus tabacifolii", "strain": "strain=KCTC 33042", "accession": "GCA_005217585.1", "taxid": 1173107, "species_taxid": 1173107, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2685, "matched_fragments": 239, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus cavernae", "strain": "strain=SYSU K30005", "accession": "GCA_009724685.1", "taxid": 2666135, "species_taxid": 2666135, "relation_to_type": "type", "validated": true, "ani": 78.043, "matched_fragments": 235, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysinibacillus contaminans", "strain": "strain=DSM 25560", "accession": "GCA_001278945.1", "taxid": 1293441, "species_taxid": 1293441, "relation_to_type": "type", "validated": true, "ani": 77.4611, "matched_fragments": 209, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.601, "matched_fragments": 71, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lederbergia wuyishanensis", "strain": "strain=CGMCC 1.12709", "accession": "GCA_022900255.1", "taxid": 1347903, "species_taxid": 1347903, "relation_to_type": "type", "validated": true, "ani": 75.8604, "matched_fragments": 61, "total_fragments": 1118, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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