{ "type": "genome", "identifier": "GCF_003628445.1", "organism": "Oceanobacillus bengalensis", "title": "Oceanobacillus bengalensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003628445.1", "bioproject": "PRJNA224116", "biosample": "SAMN10172241", "wgs_master": "RBZO00000000.1", "refseq_category": "reference genome", "taxid": "1435466", "species_taxid": "1435466", "organism_name": "Oceanobacillus bengalensis", "infraspecific_name": "strain=MCCC 1K00260", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM362844v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003628445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/628/445/GCF_003628445.1_ASM362844v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4041242", "genome_size_ungapped": "4040959", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003628445.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3992", "protein_coding_gene_count": "3819", "non_coding_gene_count": "116", "pubmed_id": "26303283" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus bengalensis" ], "sample_taxid": [ "1435466" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.146 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4041242", "Number of Sequences": "83", "Longest Sequences (bp)": "358557", "N50 (bp)": "106267", "Gap Ratio (%)": "0.007003", "GCcontent (%)": "36.5", "Number of CDSs": "3900", "Average Protein Length": "286.2", "Coding Ratio (%)": "82.9", "Number of rRNAs": "11", "Number of tRNAs": "95", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus bengalensis", "strain": "strain=MCCC 1K00260", "accession": "GCA_003628445.1", "taxid": 1435466, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 77.2868, "matched_fragments": 204, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus rekensis", "strain": "strain=PT-11", "accession": "GCA_002153375.1", "taxid": 937927, "species_taxid": 937927, "relation_to_type": "type", "validated": true, "ani": 77.1541, "matched_fragments": 200, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halophilus", "strain": "strain=IBRC-M 10683", "accession": "GCA_900129485.1", "taxid": 930117, "species_taxid": 930117, "relation_to_type": "type", "validated": true, "ani": 77.0509, "matched_fragments": 158, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacillus vulpis", "strain": "strain=Z8", "accession": "GCA_006861825.1", "taxid": 2325572, "species_taxid": 2325572, "relation_to_type": "type", "validated": true, "ani": 76.5087, "matched_fragments": 54, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 76.4992, "matched_fragments": 67, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus suaedae", "strain": "strain=LD4P30", "accession": "GCA_017599345.1", "taxid": 2820273, "species_taxid": 2820273, "relation_to_type": "type", "validated": true, "ani": 76.4443, "matched_fragments": 82, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.4359, "matched_fragments": 81, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus dipsosauri", "strain": "strain=DD1", "accession": "GCA_003176895.1", "taxid": 178340, "species_taxid": 178340, "relation_to_type": "type", "validated": true, "ani": 76.391, "matched_fragments": 86, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus niacini", "strain": "strain=NBRC 15566", "accession": "GCA_001591505.1", "taxid": 86668, "species_taxid": 86668, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0804, "matched_fragments": 53, "total_fragments": 1305, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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