{ "type": "genome", "identifier": "GCF_003628505.1", "organism": "Oceanobacillus halophilus", "title": "Oceanobacillus halophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State of Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003628505.1", "bioproject": "PRJNA224116", "biosample": "SAMN10172248", "wgs_master": "RBZP00000000.1", "refseq_category": "reference genome", "taxid": "930130", "species_taxid": "930130", "organism_name": "Oceanobacillus halophilus", "infraspecific_name": "strain=DSM 23996", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM362850v1", "asm_submitter": "Third Institute of Oceanography, State of Oceanic Administration", "gbrs_paired_asm": "GCA_003628505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/628/505/GCF_003628505.1_ASM362850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4081470", "genome_size_ungapped": "4081470", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003628505.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "3961", "protein_coding_gene_count": "3776", "non_coding_gene_count": "143", "pubmed_id": "26869142" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus halophilus" ], "sample_taxid": [ "930130" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Aran-Bidgol salt lake" ], "sample_host_location_id": [], "data_size": "1.153 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4081470", "Number of Sequences": "51", "Longest Sequences (bp)": "808993", "N50 (bp)": "189505", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "3855", "Average Protein Length": "290.0", "Coding Ratio (%)": "82.2", "Number of rRNAs": "11", "Number of tRNAs": "105", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus halophilus", "strain": "strain=DSM 23996", "accession": "GCA_003628505.1", "taxid": 930130, 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"matched_fragments": 80, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus jeddahense", "strain": "strain=S5", "accession": "GCA_000750635.1", "taxid": 1462527, "species_taxid": 1462527, "relation_to_type": "type", "validated": true, "ani": 77.1413, "matched_fragments": 118, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_014905475.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1187, "matched_fragments": 139, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus massiliensis", "strain": "strain=Vm-5", "accession": "GCA_000723585.1", "taxid": 1462526, "species_taxid": 1462526, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1125, "matched_fragments": 136, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus kimchii", "strain": "strain=X50", "accession": "GCA_000340475.1", "taxid": 746691, "species_taxid": 746691, "relation_to_type": "type", "validated": true, "ani": 76.954, "matched_fragments": 129, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinibacillus xinjiangensis", "strain": "strain=J4", "accession": "GCA_009649735.1", "taxid": 1229268, "species_taxid": 1229268, "relation_to_type": "type", "validated": true, "ani": 76.8823, "matched_fragments": 76, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus halotolerans", "strain": "strain=YIM 98839", "accession": "GCA_010993955.1", "taxid": 2663380, "species_taxid": 2663380, "relation_to_type": "type", "validated": true, "ani": 76.7886, "matched_fragments": 138, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus massiliensis", "strain": "strain=Awa-1", "accession": "GCA_001458115.1", "taxid": 1564956, "species_taxid": 1564956, "relation_to_type": "type", "validated": true, "ani": 76.6673, "matched_fragments": 76, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 76.6576, "matched_fragments": 198, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cerasibacillus terrae", "strain": "strain=CC-CFT480", "accession": "GCA_008039555.1", "taxid": 2498845, "species_taxid": 2498845, "relation_to_type": "type", "validated": true, "ani": 76.5603, "matched_fragments": 100, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 76.5076, "matched_fragments": 56, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia salsa", "strain": "strain=IBRC-M10078", "accession": "GCA_900104555.1", "taxid": 930152, "species_taxid": 930152, "relation_to_type": "type", "validated": true, "ani": 76.4969, "matched_fragments": 56, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003628505.1", "gtdb_species": "s__Oceanobacillus halophilus", "ani": 100.0, "matched_fragments": 1334, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Oceanobacillus", "ani_circumscription_radius": 95.0, 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