{
    "type": "genome",
    "identifier": "GCF_003628535.1",
    "organism": "Flavisolibacter nicotianae",
    "title": "Flavisolibacter nicotianae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003628535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10127561",
        "wgs_master": "RBCI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2364882",
        "species_taxid": "2364882",
        "organism_name": "Flavisolibacter nicotianae",
        "infraspecific_name": "strain=X7X",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/11",
        "asm_name": "ASM362853v1",
        "asm_submitter": "State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan",
        "gbrs_paired_asm": "GCA_003628535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/628/535/GCF_003628535.1_ASM362853v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6092728",
        "genome_size_ungapped": "6092728",
        "gc_percent": "49.500000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "70",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003628535.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "5155",
        "protein_coding_gene_count": "5078",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-11",
    "dateModified": "2018-10-11",
    "datePublished": "2018-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavisolibacter nicotianae"
        ],
        "sample_taxid": [
            "2364882"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Guizhou"
        ],
        "sample_host_location_id": [],
        "data_size": "1.728 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6092728",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "1105826",
        "N50 (bp)": "665645",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.7",
        "Number of CDSs": "4972",
        "Average Protein Length": "348.7",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Flavisolibacter nicotianae",
                "strain": "strain=X7X",
                "accession": "GCA_003628535.1",
                "taxid": 2364882,
                "species_taxid": 2364882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1994,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Flavisolibacter ginsenosidimutans",
                "strain": "strain=Gsoil 636",
                "accession": "GCA_007970805.1",
                "taxid": 661481,
                "species_taxid": 661481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2858,
                "matched_fragments": 374,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flaviaesturariibacter flavus",
                "strain": "strain=17J68-12",
                "accession": "GCA_004337505.1",
                "taxid": 2502780,
                "species_taxid": 2502780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8988,
                "matched_fragments": 152,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavisolibacter tropicus",
                "strain": "strain=LCS9",
                "accession": "GCA_001644645.1",
                "taxid": 1492898,
                "species_taxid": 1492898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7876,
                "matched_fragments": 96,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flaviaesturariibacter aridisoli",
                "strain": "strain=17J68-15",
                "accession": "GCA_004343705.1",
                "taxid": 2545761,
                "species_taxid": 2545761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7759,
                "matched_fragments": 187,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cnuella takakiae",
                "strain": "strain=DSM 26897",
                "accession": "GCA_900129015.1",
                "taxid": 1302690,
                "species_taxid": 1302690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7674,
                "matched_fragments": 205,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cnuella takakiae",
                "strain": "strain=RG1-1",
                "accession": "GCA_001953305.1",
                "taxid": 1302690,
                "species_taxid": 1302690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7619,
                "matched_fragments": 209,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavihumibacter cheonanensis",
                "strain": "strain=WS16",
                "accession": "GCA_022352215.1",
                "taxid": 1442385,
                "species_taxid": 1442385,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4791,
                "matched_fragments": 60,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavihumibacter fluminis",
                "strain": "strain=IMCC34837",
                "accession": "GCA_018595675.2",
                "taxid": 2838157,
                "species_taxid": 2838157,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3462,
                "matched_fragments": 54,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella koreensis",
                "strain": "strain=GR20-10",
                "accession": "GCA_000246855.1",
                "taxid": 354356,
                "species_taxid": 354356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2273,
                "matched_fragments": 116,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella koreensis",
                "strain": "strain=DSM 17620",
                "accession": "GCA_002077985.1",
                "taxid": 354356,
                "species_taxid": 354356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0464,
                "matched_fragments": 117,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella vici",
                "strain": "strain=DJ57",
                "accession": "GCA_002077945.1",
                "taxid": 1703345,
                "species_taxid": 1703345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0321,
                "matched_fragments": 121,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella populi",
                "strain": "strain=CCTCC AB 208238",
                "accession": "GCA_002078015.1",
                "taxid": 550983,
                "species_taxid": 550983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9786,
                "matched_fragments": 94,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga oryzae",
                "strain": "strain=1303",
                "accession": "GCA_012516375.2",
                "taxid": 2725414,
                "species_taxid": 2725414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.818,
                "matched_fragments": 66,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacibacter cauensis",
                "strain": "strain=CGMCC 1.7271",
                "accession": "GCA_007830055.1",
                "taxid": 510947,
                "species_taxid": 510947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.781,
                "matched_fragments": 76,
                "total_fragments": 1995,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003628535.1",
                "gtdb_species": "s__Flavisolibacter nicotianae",
                "ani": 100.0,
                "matched_fragments": 1994,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013327885.1",
                "gtdb_species": "s__Flavisolibacter sp013327885",
                "ani": 78.4682,
                "matched_fragments": 613,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014163555.1",
                "gtdb_species": "s__Flavisolibacter sp014163555",
                "ani": 78.4199,
                "matched_fragments": 546,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007970805.1",
                "gtdb_species": "s__Flavisolibacter ginsenosidimutans",
                "ani": 77.2858,
                "matched_fragments": 374,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003332885.2",
                "gtdb_species": "s__Paracnuella aquatica",
                "ani": 76.9535,
                "matched_fragments": 245,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paracnuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.63",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001644645.1",
                "gtdb_species": "s__Flavisolibacter_B tropicus",
                "ani": 76.7876,
                "matched_fragments": 96,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001953305.1",
                "gtdb_species": "s__Cnuella takakiae",
                "ani": 76.7834,
                "matched_fragments": 207,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Cnuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004173235.1",
                "gtdb_species": "s__Flaviaesturariibacter sp004173235",
                "ani": 76.6353,
                "matched_fragments": 133,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019247775.1",
                "gtdb_species": "s__Sediminibacterium sp019247775",
                "ani": 76.3876,
                "matched_fragments": 79,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Sediminibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016192105.1",
                "gtdb_species": "s__JJ008 sp016192105",
                "ani": 76.2659,
                "matched_fragments": 85,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JJ008",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018595675.1",
                "gtdb_species": "s__Flavihumibacter sp018595675",
                "ani": 76.2258,
                "matched_fragments": 55,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004173255.1",
                "gtdb_species": "s__46-32 sp004173255",
                "ani": 75.7744,
                "matched_fragments": 65,
                "total_fragments": 1995,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__46-32",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.209,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 5172904.333,
        "gc_content": 41.5,
        "coding_genes": 4747.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 42.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Flavisolibacter",
        "nicotianae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}