{ "type": "genome", "identifier": "GCF_003633685.1", "organism": "Micromonospora pisi", "title": "Micromonospora pisi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003633685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443122", "wgs_master": "RBKT00000000.1", "refseq_category": "reference genome", "taxid": "589240", "species_taxid": "589240", "organism_name": "Micromonospora pisi", "infraspecific_name": "strain=DSM 45175", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363368v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003633685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/633/685/GCF_003633685.1_ASM363368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8739867", "genome_size_ungapped": "8739867", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003633685.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "7699", "protein_coding_gene_count": "7467", "non_coding_gene_count": "109", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora pisi" ], "sample_taxid": [ "589240" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.349 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8739867", "Number of Sequences": "1", "Longest Sequences (bp)": "8739867", "N50 (bp)": "8739867", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "7744", "Average Protein Length": "334.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "12", "Number of tRNAs": "110", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 81.5709, "matched_fragments": 950, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora kangleipakensis", "strain": "strain=DSM 45612", "accession": "GCA_004217615.1", "taxid": 1077942, "species_taxid": 1077942, "relation_to_type": "type", "validated": true, "ani": 81.5609, "matched_fragments": 1199, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinaurantiaca", "strain": "strain=DSM 43904", "accession": "GCA_900090235.1", "taxid": 47857, "species_taxid": 47857, "relation_to_type": "type", "validated": true, "ani": 81.3886, "matched_fragments": 1260, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora inositola", "strain": "strain=DSM 43819", "accession": "GCA_900090285.1", "taxid": 47865, "species_taxid": 47865, "relation_to_type": "type", "validated": true, "ani": 81.3623, "matched_fragments": 1193, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora veneta", "strain": "strain=CAP181", "accession": "GCA_016598485.1", "taxid": 2796464, "species_taxid": 2796464, "relation_to_type": "type", "validated": true, "ani": 81.3074, "matched_fragments": 1171, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 81.2271, "matched_fragments": 1135, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora coxensis", "strain": "strain=DSM 45161", "accession": "GCA_900090295.1", "taxid": 356852, "species_taxid": 356852, "relation_to_type": "type", "validated": true, "ani": 81.1974, "matched_fragments": 1245, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 81.0715, "matched_fragments": 1032, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora polyrhachis", "strain": "strain=DSM 45886", "accession": "GCA_014203835.1", "taxid": 1282883, "species_taxid": 1282883, "relation_to_type": "type", "validated": true, "ani": 81.0645, "matched_fragments": 1098, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora siamensis", "strain": "strain=DSM 45097", "accession": "GCA_900090305.1", "taxid": 299152, "species_taxid": 299152, "relation_to_type": "type", "validated": true, "ani": 81.0341, "matched_fragments": 1175, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, "species_taxid": 47858, "relation_to_type": "type", "validated": true, "ani": 80.9892, "matched_fragments": 1219, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 80.9385, "matched_fragments": 1260, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rubida", "strain": "strain=NEAU-HG-1", "accession": "GCA_009908295.1", "taxid": 2697657, "species_taxid": 2697657, "relation_to_type": "type", "validated": true, "ani": 80.9204, "matched_fragments": 1213, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43815", "accession": "GCA_014205165.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 80.8986, "matched_fragments": 1273, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora krabiensis", "strain": "strain=DSM 45344", "accession": "GCA_900091425.1", "taxid": 307121, "species_taxid": 307121, "relation_to_type": "type", "validated": true, "ani": 80.8853, "matched_fragments": 1287, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=DSM 43168", "accession": "GCA_900091535.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 80.8431, "matched_fragments": 1277, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora craterilacus", "strain": "strain=NA12", "accession": "GCA_003236315.1", "taxid": 1655439, "species_taxid": 1655439, "relation_to_type": "type", "validated": true, "ani": 80.8326, "matched_fragments": 1108, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora wenchangensis", "strain": "strain=CCTCC AA 2012002", "accession": "GCA_002210435.1", "taxid": 1185415, "species_taxid": 1185415, "relation_to_type": "type", "validated": true, "ani": 80.8266, "matched_fragments": 1249, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora yangpuensis", "strain": "strain=DSM 45577", "accession": "GCA_900091615.1", "taxid": 683228, "species_taxid": 683228, "relation_to_type": "type", "validated": true, "ani": 80.8169, "matched_fragments": 1149, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora pattaloongensis", "strain": "strain=DSM 45245", "accession": "GCA_900107255.1", "taxid": 405436, "species_taxid": 405436, 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true, "ani": 80.6861, "matched_fragments": 1127, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora marina", "strain": "strain=DSM 45555", "accession": "GCA_900091565.1", "taxid": 307120, "species_taxid": 307120, "relation_to_type": "type", "validated": true, "ani": 80.6717, "matched_fragments": 1098, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 80.6567, "matched_fragments": 1153, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora costi", "strain": "strain=CS1-12", "accession": "GCA_003626655.1", "taxid": 1530042, "species_taxid": 1530042, "relation_to_type": "type", "validated": true, "ani": 80.6109, "matched_fragments": 1257, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora vitiensis", "strain": "strain=DSM 45548", "accession": "GCA_000378825.1", "taxid": 999544, "species_taxid": 999544, "relation_to_type": "type", "validated": true, "ani": 79.8642, "matched_fragments": 787, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora vitiensis", "strain": "strain=CNT-148", "accession": "GCA_000514675.1", "taxid": 999544, "species_taxid": 999544, "relation_to_type": "type", "validated": true, "ani": 79.8085, "matched_fragments": 792, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora arenicola", "strain": "strain=DSM 44819", "accession": "GCA_006716065.1", "taxid": 168697, "species_taxid": 168697, "relation_to_type": "type", "validated": true, "ani": 79.6669, "matched_fragments": 815, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans suffuscus", "strain": "strain=NBRC 105367", "accession": "GCA_011764565.1", "taxid": 624315, "species_taxid": 624315, "relation_to_type": "type", "validated": true, "ani": 79.0704, "matched_fragments": 1232, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 78.9531, "matched_fragments": 1201, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 78.3001, "matched_fragments": 1025, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 75.9725, "matched_fragments": 493, "total_fragments": 2913, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003633685.1", "gtdb_species": "s__Micromonospora_G pisi", "ani": 100.0, "matched_fragments": 2911, "total_fragments": 2913, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003030345.1", "gtdb_species": "s__Plantactinospora sp003030345", "ani": 81.6886, 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