{ "type": "genome", "identifier": "GCF_003633715.1", "organism": "Thermovibrio guaymasensis", "title": "Thermovibrio guaymasensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003633715.1", "bioproject": "PRJNA224116", "biosample": "SAMN08769611", "wgs_master": "RBIE00000000.1", "refseq_category": "reference genome", "taxid": "240167", "species_taxid": "240167", "organism_name": "Thermovibrio guaymasensis", "infraspecific_name": "strain=DSM 15521", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363371v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003633715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/633/715/GCF_003633715.1_ASM363371v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1621718", "genome_size_ungapped": "1621506", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003633715.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "1743", "protein_coding_gene_count": "1687", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermovibrio guaymasensis" ], "sample_taxid": [ "240167" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean:Guaymas Basin off the coast of California" ], "sample_host_location_id": [], "data_size": "0.455 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1621718", "Number of Sequences": "9", "Longest Sequences (bp)": "982355", "N50 (bp)": "982355", "Gap Ratio (%)": "0.013073", "GCcontent (%)": "43.2", "Number of CDSs": "1706", "Average Protein Length": "303.8", "Coding Ratio (%)": "95.9", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermovibrio guaymasensis", "strain": "strain=DSM 15521", "accession": "GCA_003633715.1", "taxid": 240167, "species_taxid": 240167, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 536, "total_fragments": 536, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Phorcysia thermohydrogeniphila", "strain": "strain=DSM 24425", "accession": "GCA_004339575.1", "taxid": 936138, "species_taxid": 936138, "relation_to_type": "type", "validated": true, "ani": 77.6879, "matched_fragments": 130, "total_fragments": 536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Balnearium lithotrophicum", "strain": "strain=DSM 16304", "accession": "GCA_900182585.1", "taxid": 223788, "species_taxid": 223788, "relation_to_type": "type", "validated": true, "ani": 77.6854, "matched_fragments": 136, "total_fragments": 536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermovibrio ammonificans", "strain": "strain=HB-1", "accession": "GCA_000185805.1", "taxid": 228745, "species_taxid": 228745, "relation_to_type": "type", "validated": true, "ani": 77.6679, "matched_fragments": 113, "total_fragments": 536, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfurobacterium thermolithotrophum", "strain": "strain=DSM 11699", "accession": "GCA_000191045.1", "taxid": 64160, "species_taxid": 64160, "relation_to_type": "type", "validated": true, "ani": 77.5589, "matched_fragments": 58, "total_fragments": 536, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003633715.1", "gtdb_species": "s__Thermovibrio guaymasensis", "ani": 100.0, "matched_fragments": 536, "total_fragments": 536, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Desulfurobacteriia;o__Desulfurobacteriales;f__Desulfurobacteriaceae;g__Thermovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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