{ "type": "genome", "identifier": "GCF_003633755.1", "organism": "Solirubrobacter pauli", "title": "Solirubrobacter pauli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003633755.1", "bioproject": "PRJNA224116", "biosample": "SAMN08777686", "wgs_master": "RBIL00000000.1", "refseq_category": "reference genome", "taxid": "166793", "species_taxid": "166793", "organism_name": "Solirubrobacter pauli", "infraspecific_name": "strain=DSM 14954", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363375v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003633755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/633/755/GCF_003633755.1_ASM363375v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7135497", "genome_size_ungapped": "7135284", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003633755.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6702", "protein_coding_gene_count": "6601", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirubrobacter pauli" ], "sample_taxid": [ "166793" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Georgia, Athens" ], "sample_host_location_id": [], "data_size": "1.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7135497", "Number of Sequences": "4", "Longest Sequences (bp)": "4255451", "N50 (bp)": "4255451", "Gap Ratio (%)": "0.002985", "GCcontent (%)": "72.1", "Number of CDSs": "6703", "Average Protein Length": "336.0", "Coding Ratio (%)": "94.7", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2377, "total_fragments": 2377, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 77.1895, "matched_fragments": 780, "total_fragments": 2377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 77.135, "matched_fragments": 906, "total_fragments": 2377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 77.0803, "matched_fragments": 935, "total_fragments": 2377, "ani_threshold": 95, "status": "below_threshold" }, { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Solirubrobacter", "pauli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }