{ "type": "genome", "identifier": "GCF_003633895.1", "organism": "Vogesella indigofera", "title": "Vogesella indigofera", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003633895.1", "bioproject": "PRJNA224116", "biosample": "SAMN08775229", "wgs_master": "RBID00000000.1", "refseq_category": "reference genome", "taxid": "45465", "species_taxid": "45465", "organism_name": "Vogesella indigofera", "infraspecific_name": "strain=DSM 3303", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363389v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003633895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/633/895/GCF_003633895.1_ASM363389v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3621567", "genome_size_ungapped": "3621371", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003633895.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3464", "protein_coding_gene_count": "3373", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vogesella indigofera" ], "sample_taxid": [ "45465" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3621567", "Number of Sequences": "20", "Longest Sequences (bp)": "799755", "N50 (bp)": "386899", "Gap Ratio (%)": "0.005550", "GCcontent (%)": "64.3", "Number of CDSs": "3385", "Average Protein Length": "315.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "2", "Number of tRNAs": "72", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vogesella indigofera", "strain": "strain=DSM 3303", "accession": "GCA_003633895.1", "taxid": 45465, "species_taxid": 45465, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1197, "ani_threshold": 95, 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