{ "type": "genome", "identifier": "GCF_003634455.1", "organism": "Flavobacterium endophyticum", "title": "Flavobacterium endophyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003634455.1", "bioproject": "PRJNA224116", "biosample": "SAMN07620976", "wgs_master": "RBLC00000000.1", "refseq_category": "reference genome", "taxid": "1540163", "species_taxid": "1540163", "organism_name": "Flavobacterium endophyticum", "infraspecific_name": "strain=DSM 29537", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363445v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003634455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/634/455/GCF_003634455.1_ASM363445v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3745791", "genome_size_ungapped": "3744789", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003634455.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3369", "protein_coding_gene_count": "3304", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium endophyticum" ], "sample_taxid": [ "1540163" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.056 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3745791", "Number of Sequences": "11", "Longest Sequences (bp)": "2140329", "N50 (bp)": "2140329", "Gap Ratio (%)": "0.026750", "GCcontent (%)": "39.1", "Number of CDSs": "3264", "Average Protein Length": "341.6", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium endophyticum", "strain": "strain=DSM 29537", "accession": "GCA_003634455.1", "taxid": 1540163, "species_taxid": 1540163, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1244, 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"N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002846575.1", "gtdb_species": "s__Flavobacterium lindanitolerans", "ani": 81.4408, "matched_fragments": 841, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "97.14", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_003865365.1", "gtdb_species": "s__Flavobacterium macacae", "ani": 79.5541, "matched_fragments": 483, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000422705.1", "gtdb_species": "s__Flavobacterium soli", "ani": 78.5067, "matched_fragments": 293, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 78.306, "matched_fragments": 145, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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