{
    "type": "genome",
    "identifier": "GCF_003634525.1",
    "organism": "Williamsia muralis",
    "title": "Williamsia muralis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003634525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09070656",
        "wgs_master": "RBKV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "85044",
        "species_taxid": "85044",
        "organism_name": "Williamsia muralis",
        "infraspecific_name": "strain=DSM 44343",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/11",
        "asm_name": "ASM363452v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_003634525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/634/525/GCF_003634525.1_ASM363452v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5401534",
        "genome_size_ungapped": "5401534",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003634525.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "5017",
        "protein_coding_gene_count": "4919",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-11",
    "dateModified": "2018-10-11",
    "datePublished": "2018-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Williamsia muralis"
        ],
        "sample_taxid": [
            "85044"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.495 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5401534",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5216225",
        "N50 (bp)": "5216225",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.8",
        "Number of CDSs": "5025",
        "Average Protein Length": "326.5",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Williamsia muralis",
                "strain": "strain=DSM 44343",
                "accession": "GCA_003634525.1",
                "taxid": 85044,
                "species_taxid": 85044,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1798,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Williamsia muralis",
                "strain": "strain=NBRC 105860",
                "accession": "GCA_001598915.1",
                "taxid": 85044,
                "species_taxid": 85044,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9901,
                "matched_fragments": 1785,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Williamsia limnetica",
                "strain": "strain=DSM 45521",
                "accession": "GCA_003217475.1",
                "taxid": 882452,
                "species_taxid": 882452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9707,
                "matched_fragments": 981,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Williamsia soli",
                "strain": "strain=C17",
                "accession": "GCA_017377795.1",
                "taxid": 364929,
                "species_taxid": 364929,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0894,
                "matched_fragments": 920,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Williamsia phyllosphaerae",
                "strain": "strain=CCM 7855",
                "accession": "GCA_014635305.1",
                "taxid": 885042,
                "species_taxid": 885042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5385,
                "matched_fragments": 561,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia amicalis",
                "strain": "strain=DSM 44461",
                "accession": "GCA_012395955.1",
                "taxid": 89053,
                "species_taxid": 89053,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4563,
                "matched_fragments": 485,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia desulfuricans",
                "strain": "strain=213E",
                "accession": "GCA_010119475.1",
                "taxid": 89051,
                "species_taxid": 89051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3889,
                "matched_fragments": 499,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodococcus oryzae",
                "strain": "strain=NEAU-CX67",
                "accession": "GCA_005049235.1",
                "taxid": 2571143,
                "species_taxid": 2571143,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8897,
                "matched_fragments": 370,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia asplenii",
                "strain": "strain=TBRC 11910",
                "accession": "GCA_012933505.1",
                "taxid": 2725283,
                "species_taxid": 2725283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7743,
                "matched_fragments": 423,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia coubleae",
                "strain": "strain=NBRC 108252",
                "accession": "GCA_001612805.1",
                "taxid": 356147,
                "species_taxid": 356147,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7266,
                "matched_fragments": 358,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia coubleae",
                "strain": "strain=DSM 44960",
                "accession": "GCA_012395945.1",
                "taxid": 356147,
                "species_taxid": 356147,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7139,
                "matched_fragments": 359,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prescottella agglutinans",
                "strain": "strain=CCTCC AB2014297",
                "accession": "GCA_004011865.1",
                "taxid": 1644129,
                "species_taxid": 1644129,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6845,
                "matched_fragments": 370,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
                "strain": "strain=NBRC 108937",
                "accession": "GCA_001612615.1",
                "taxid": 756689,
                "species_taxid": 756689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6796,
                "matched_fragments": 355,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
                "strain": "strain=DSM 45539",
                "accession": "GCA_024172045.1",
                "taxid": 756689,
                "species_taxid": 756689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6015,
                "matched_fragments": 360,
                "total_fragments": 1799,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001598915.1",
                "gtdb_species": "s__Williamsia muralis",
                "ani": 99.9901,
                "matched_fragments": 1785,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.715,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "96.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000717275.1",
                "gtdb_species": "s__Williamsia arboriphila",
                "ani": 95.6742,
                "matched_fragments": 1563,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.715,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002735905.1",
                "gtdb_species": "s__Williamsia muralis_A",
                "ani": 95.461,
                "matched_fragments": 1521,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.5136,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.65",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003217475.1",
                "gtdb_species": "s__Williamsia limnetica",
                "ani": 80.9444,
                "matched_fragments": 985,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002095435.2",
                "gtdb_species": "s__Williamsia sp002095435",
                "ani": 80.756,
                "matched_fragments": 981,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002095395.1",
                "gtdb_species": "s__Williamsia sp002095395",
                "ani": 80.4509,
                "matched_fragments": 930,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017377795.1",
                "gtdb_species": "s__Williamsia sp017377795",
                "ani": 80.0893,
                "matched_fragments": 920,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003202005.1",
                "gtdb_species": "s__Williamsia faeni",
                "ani": 79.9602,
                "matched_fragments": 758,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001612615.1",
                "gtdb_species": "s__Nocardia amikacinitolerans",
                "ani": 77.682,
                "matched_fragments": 352,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015477835.1",
                "gtdb_species": "s__Nocardia higoensis_A",
                "ani": 77.5732,
                "matched_fragments": 329,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013839555.1",
                "gtdb_species": "s__Nocardia sp013839555",
                "ani": 77.4552,
                "matched_fragments": 283,
                "total_fragments": 1799,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.2705,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.167,
        "doubling_h": null,
        "growth_tmp": 26.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 5537730.5,
        "gc_content": 64.72,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.75,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.375,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.375,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Williamsia",
        "muralis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}