{ "type": "genome", "identifier": "GCF_003634635.1", "organism": "Marinobacter nauticus", "title": "Marinobacter nauticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003634635.1", "bioproject": "PRJNA224116", "biosample": "SAMN08769784", "wgs_master": "RBJB00000000.1", "refseq_category": "na", "taxid": "2743", "species_taxid": "2743", "organism_name": "Marinobacter nauticus", "infraspecific_name": "strain=DSM 50418", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363463v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003634635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/634/635/GCF_003634635.1_ASM363463v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3977309", "genome_size_ungapped": "3977015", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003634635.1-RS_2025_01_02", "annotation_date": "2025-01-02", "total_gene_count": "3738", "protein_coding_gene_count": "3668", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter nauticus" ], "sample_taxid": [ "2743" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.126 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3977309", "Number of Sequences": "10", "Longest Sequences (bp)": "1207019", "N50 (bp)": "1194714", "Gap Ratio (%)": "0.007392", "GCcontent (%)": "57.5", "Number of CDSs": "3703", "Average Protein Length": "327.2", "Coding Ratio (%)": "91.4", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1321, "total_fragments": 1321, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 82.7862, "matched_fragments": 739, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daepoensis", "strain": "strain=DSM 16072", "accession": "GCA_000421165.1", "taxid": 262077, "species_taxid": 262077, "relation_to_type": "type", "validated": true, "ani": 81.9419, "matched_fragments": 789, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 81.6744, "matched_fragments": 782, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 81.6689, "matched_fragments": 782, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 81.2121, "matched_fragments": 661, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.5624, "matched_fragments": 603, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 80.4942, "matched_fragments": 694, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 80.4913, "matched_fragments": 523, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 80.4141, "matched_fragments": 707, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 80.4131, "matched_fragments": 525, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 80.0459, "matched_fragments": 603, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.9327, "matched_fragments": 506, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.7221, "matched_fragments": 571, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.7138, "matched_fragments": 513, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 79.1398, "matched_fragments": 520, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 79.0611, "matched_fragments": 460, "total_fragments": 1321, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000284615.1", "gtdb_species": "s__Marinobacter hydrocarbonoclasticus", "ani": 97.5334, "matched_fragments": 1208, "total_fragments": 1321, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 26, "status": "conclusive" }, { "accession": "GCF_002258215.1", "gtdb_species": "s__Marinobacter vinifirmus", "ani": 82.8084, "matched_fragments": 737, "total_fragments": 1321, "gtdb_taxonomy": 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0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Marinobacter", "nauticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }