{ "type": "genome", "identifier": "GCF_003634665.1", "organism": "Otariodibacter oris", "title": "Otariodibacter oris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003634665.1", "bioproject": "PRJNA224116", "biosample": "SAMN09064533", "wgs_master": "RBJC00000000.1", "refseq_category": "na", "taxid": "1032623", "species_taxid": "1032623", "organism_name": "Otariodibacter oris", "infraspecific_name": "strain=DSM 23800", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363466v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003634665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/634/665/GCF_003634665.1_ASM363466v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1997501", "genome_size_ungapped": "1996104", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003634665.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "1922", "protein_coding_gene_count": "1849", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Otariodibacter oris" ], "sample_taxid": [ "1032623" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.562 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1997501", "Number of Sequences": "12", "Longest Sequences (bp)": "852880", "N50 (bp)": "278073", "Gap Ratio (%)": "0.070238", "GCcontent (%)": "36.1", "Number of CDSs": "1863", "Average Protein Length": "319.9", "Coding Ratio (%)": "89.5", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Otariodibacter oris", "strain": "strain=DSM 23800", "accession": "GCA_003634665.1", "taxid": 1032623, "species_taxid": 1032623, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 660, "total_fragments": 661, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Otariodibacter oris", "strain": "strain=Baika1", "accession": "GCA_009684715.1", "taxid": 1032623, "species_taxid": 1032623, "relation_to_type": "type", "validated": true, "ani": 99.9947, "matched_fragments": 655, "total_fragments": 661, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ursidibacter maritimus", "strain": "strain=Pb43106", "accession": "GCA_019188485.1", "taxid": 1331689, "species_taxid": 1331689, "relation_to_type": "type", "validated": true, "ani": 79.126, "matched_fragments": 261, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ursidibacter maritimus", "strain": "strain=Pb43106", "accession": "GCA_009761395.1", "taxid": 1331689, "species_taxid": 1331689, "relation_to_type": "type", "validated": true, "ani": 79.0227, "matched_fragments": 259, "total_fragments": 661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glaesserella 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