{ "type": "genome", "identifier": "GCF_003634695.1", "organism": "Motilibacter peucedani", "title": "Motilibacter peucedani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003634695.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621088", "wgs_master": "RBWV00000000.1", "refseq_category": "reference genome", "taxid": "598650", "species_taxid": "598650", "organism_name": "Motilibacter peucedani", "infraspecific_name": "strain=RP-AC37", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/11", "asm_name": "ASM363469v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003634695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/634/695/GCF_003634695.1_ASM363469v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4187555", "genome_size_ungapped": "4187419", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003634695.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3936", "protein_coding_gene_count": "3852", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-11", "dateModified": "2018-10-11", "datePublished": "2018-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Motilibacter peucedani" ], "sample_taxid": [ "598650" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Mara Island of Jeju" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4187555", "Number of Sequences": "17", "Longest Sequences (bp)": "740038", "N50 (bp)": "467448", "Gap Ratio (%)": "0.003248", "GCcontent (%)": "73.6", "Number of CDSs": "3926", "Average Protein Length": "330.1", "Coding Ratio (%)": "92.9", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Motilibacter peucedani", "strain": "strain=RP-AC37", "accession": "GCA_003634695.1", "taxid": 598650, "species_taxid": 598650, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1386, 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"below_threshold" }, { "organism_name": "Carbonactinospora thermoautotrophica", "strain": "strain=UBT1", "accession": "GCA_001543895.1", "taxid": 1469144, "species_taxid": 1469144, "relation_to_type": "type", "validated": true, "ani": 77.3484, "matched_fragments": 380, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus marinus", "strain": "strain=JCM 14547", "accession": "GCA_013004605.1", "taxid": 351215, "species_taxid": 351215, "relation_to_type": "type", "validated": true, "ani": 77.2965, "matched_fragments": 375, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serinicoccus hydrothermalis", "strain": "strain=JLT9", "accession": "GCA_001685415.1", "taxid": 1758689, "species_taxid": 1758689, "relation_to_type": "type", "validated": true, "ani": 77.1582, "matched_fragments": 343, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"relation_to_type": "type", "validated": true, "ani": 76.5893, "matched_fragments": 490, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003634695.1", "gtdb_species": "s__Motilibacter peucedani", "ani": 100.0, "matched_fragments": 1386, "total_fragments": 1387, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Motilibacterales;f__Motilibacteraceae;g__Motilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004216915.1", "gtdb_species": "s__Motilibacter rhizosphaerae", "ani": 81.4276, "matched_fragments": 822, "total_fragments": 1387, "gtdb_taxonomy": 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