{ "type": "genome", "identifier": "GCF_003640665.1", "organism": "Galactobacter caseinivorans", "title": "Galactobacter caseinivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitaet Bonn", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003640665.1", "bioproject": "PRJNA224116", "biosample": "SAMN09721488", "wgs_master": "QQXL00000000.1", "refseq_category": "reference genome", "taxid": "2676123", "species_taxid": "2676123", "organism_name": "Galactobacter caseinivorans", "infraspecific_name": "strain=JZ R-183", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/13", "asm_name": "ASM364066v1", "asm_submitter": "Universitaet Bonn", "gbrs_paired_asm": "GCA_003640665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/640/665/GCF_003640665.1_ASM364066v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2949884", "genome_size_ungapped": "2949884", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003640665.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2717", "protein_coding_gene_count": "2627", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-13", "dateModified": "2018-10-13", "datePublished": "2018-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Galactobacter caseinivorans" ], "sample_taxid": [ "2676123" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:Verden" ], "sample_host_location_id": [], "data_size": "0.813 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2949884", "Number of Sequences": "19", "Longest Sequences (bp)": "779719", "N50 (bp)": "385502", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "2715", "Average Protein Length": "324.1", "Coding Ratio (%)": "89.5", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Galactobacter caseinivorans", "strain": "strain=JZ R-183", "accession": "GCA_003640665.1", "taxid": 2676123, "species_taxid": 2676123, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 976, "total_fragments": 977, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Galactobacter valiniphilus", "strain": "strain=JZ R-35", "accession": "GCA_003575975.1", "taxid": 2676122, "species_taxid": 2676122, "relation_to_type": "type", "validated": true, "ani": 80.3036, "matched_fragments": 532, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus endophyticus", "strain": "strain=DSM 17945", "accession": "GCA_014205115.1", "taxid": 455343, "species_taxid": 455343, "relation_to_type": "type", "validated": true, "ani": 78.0464, "matched_fragments": 247, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus lylae", "strain": "strain=NBRC 15355", "accession": "GCA_001570885.1", "taxid": 1273, "species_taxid": 1273, "relation_to_type": "type", "validated": true, "ani": 78.0102, "matched_fragments": 218, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella salsuginis", "strain": "strain=KCTC 19466", "accession": "GCA_014651715.1", "taxid": 578222, "species_taxid": 578222, "relation_to_type": "type", "validated": true, "ani": 77.8913, "matched_fragments": 208, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter kerguelensis", "strain": "strain=DSM 15797", "accession": "GCA_017876535.1", "taxid": 254788, "species_taxid": 254788, "relation_to_type": "type", "validated": true, "ani": 77.8726, "matched_fragments": 230, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.6993, "matched_fragments": 175, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6738, "matched_fragments": 139, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.6705, "matched_fragments": 156, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter uratoxydans", "strain": "strain=NBRC 15515", "accession": "GCA_006539925.1", "taxid": 43667, "species_taxid": 43667, "relation_to_type": "type", "validated": true, "ani": 77.656, "matched_fragments": 189, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria sediminis", "strain": "strain=JCM 17929", "accession": "GCA_009735315.1", "taxid": 1038857, "species_taxid": 1038857, "relation_to_type": "type", "validated": true, "ani": 77.6294, "matched_fragments": 184, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.6227, "matched_fragments": 176, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rothia kristinae", "strain": "strain=NBRC 15354", "accession": "GCA_001570865.1", "taxid": 37923, "species_taxid": 37923, "relation_to_type": "type", "validated": true, "ani": 77.6068, "matched_fragments": 181, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citricoccus zhacaiensis", "strain": "strain=CGMCC 1.7064", "accession": "GCA_014645315.1", "taxid": 489142, "species_taxid": 489142, "relation_to_type": "type", "validated": true, "ani": 77.5836, "matched_fragments": 203, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rothia kristinae", "strain": "strain=FDAARGOS_864", "accession": "GCA_016028855.1", "taxid": 37923, "species_taxid": 37923, "relation_to_type": "type", "validated": true, "ani": 77.5709, "matched_fragments": 181, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 77.5681, "matched_fragments": 207, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter wenxiniae", "strain": "strain=AETb3-4", "accession": "GCA_013376105.1", "taxid": 2713570, "species_taxid": 2713570, "relation_to_type": "type", "validated": true, "ani": 77.5025, "matched_fragments": 218, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria tytonis", "strain": "strain=442", "accession": "GCA_003226895.2", "taxid": 2054280, "species_taxid": 2054280, "relation_to_type": "type", "validated": true, "ani": 77.4784, "matched_fragments": 190, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 77.2596, "matched_fragments": 151, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella flava", "strain": "strain=DSM 26152", "accession": "GCA_015751895.1", "taxid": 1285193, "species_taxid": 1285193, "relation_to_type": "type", "validated": true, "ani": 77.1664, "matched_fragments": 175, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zhaozhouensis", "strain": "strain=CGMCC 4.7095", "accession": "GCA_900230195.1", "taxid": 1300267, "species_taxid": 1300267, "relation_to_type": "type", "validated": true, "ani": 75.9801, "matched_fragments": 111, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sedi", "strain": "strain=JCM 16909", "accession": "GCA_006335015.1", "taxid": 555059, "species_taxid": 555059, "relation_to_type": "type", "validated": true, "ani": 75.8201, "matched_fragments": 108, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003640665.1", "gtdb_species": "s__Galactobacter caseinivorans", "ani": 100.0, "matched_fragments": 976, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003575975.1", "gtdb_species": "s__Galactobacter valiniphilus", "ani": 80.3042, "matched_fragments": 532, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008580665.1", "gtdb_species": "s__Zafaria cholistanensis", "ani": 78.2729, "matched_fragments": 256, "total_fragments": 977, "gtdb_taxonomy": 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