{ "tc_result": [ { "organism_name": "Sphingomonas paeninsulae", "strain": "strain=YZ-8", "accession": "GCA_003660165.1", "taxid": 2319844, "species_taxid": 2319844, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1329, "total_fragments": 1330, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 77.4472, "matched_fragments": 204, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium boeckii", "strain": "strain=DSM 25079", "accession": "GCA_014199215.1", "taxid": 1082345, "species_taxid": 1082345, "relation_to_type": "type", "validated": true, "ani": 77.3022, "matched_fragments": 193, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aliaeris", "strain": "strain=DH-S5", "accession": "GCA_016743815.1", "taxid": 2759526, "species_taxid": 2759526, "relation_to_type": "type", "validated": true, "ani": 77.2366, "matched_fragments": 190, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium yanoikuyae", "strain": "strain=ATCC 51230", "accession": "GCA_000315525.1", "taxid": 13690, "species_taxid": 13690, "relation_to_type": "suspected-type", "validated": true, "ani": 77.196, "matched_fragments": 174, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.1918, "matched_fragments": 186, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 77.1889, "matched_fragments": 213, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas faeni", "strain": "strain=MA-olki", "accession": "GCA_003053745.1", "taxid": 185950, "species_taxid": 185950, "relation_to_type": "type", "validated": true, "ani": 77.0821, "matched_fragments": 194, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 77.048, "matched_fragments": 166, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.0459, "matched_fragments": 197, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 77.0356, "matched_fragments": 168, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium baderi", "strain": "strain=LL03", "accession": "GCA_000445145.1", "taxid": 1332080, "species_taxid": 1332080, "relation_to_type": "type", "validated": true, "ani": 77.0323, "matched_fragments": 159, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus dicambivorans", "strain": "strain=Ndbn-20", "accession": "GCA_002355275.1", "taxid": 1850238, "species_taxid": 1850238, "relation_to_type": "type", "validated": true, "ani": 77.022, "matched_fragments": 160, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisediminimonas profunda", "strain": "strain=DS48-3", "accession": "GCA_019443285.1", "taxid": 1550733, "species_taxid": 1550733, "relation_to_type": "type", "validated": true, "ani": 77.0027, "matched_fragments": 97, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingorhabdus pulchriflava", "strain": "strain=GY_G", "accession": "GCA_003367235.1", "taxid": 2292257, "species_taxid": 2292257, "relation_to_type": "type", "validated": true, "ani": 76.9659, "matched_fragments": 103, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas lutea", "strain": "strain=KCTC 23642", "accession": "GCA_014396785.1", "taxid": 1045317, "species_taxid": 1045317, "relation_to_type": "type", "validated": true, "ani": 76.9562, "matched_fragments": 82, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium psychrophilum", "strain": "strain=AR-3-1", "accession": "GCA_012927105.1", "taxid": 2728834, "species_taxid": 2728834, "relation_to_type": "type", "validated": true, "ani": 76.9543, "matched_fragments": 189, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 76.9412, "matched_fragments": 181, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas lutea", "strain": "strain=KCTC 23642", "accession": "GCA_021497585.1", "taxid": 1045317, "species_taxid": 1045317, "relation_to_type": "type", "validated": true, "ani": 76.9249, "matched_fragments": 83, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium baderi", "strain": "strain=LL03", "accession": "GCA_001046655.1", "taxid": 1332080, "species_taxid": 1332080, "relation_to_type": "type", "validated": true, "ani": 76.91, "matched_fragments": 160, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 76.7663, "matched_fragments": 162, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus histidinilytica", "strain": "strain=UM2", "accession": "GCA_900167915.1", "taxid": 439228, "species_taxid": 439228, "relation_to_type": "type", "validated": true, "ani": 76.7346, "matched_fragments": 171, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter tenebrarum", "strain": "strain=zrk23", "accession": "GCA_011057975.1", "taxid": 2711215, "species_taxid": 2711215, "relation_to_type": "type", "validated": true, "ani": 76.6579, "matched_fragments": 166, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas deserti", "strain": "strain=GL-C-18", "accession": "GCA_003012735.1", "taxid": 2116704, "species_taxid": 2116704, "relation_to_type": "type", "validated": true, "ani": 76.1226, "matched_fragments": 132, "total_fragments": 1330, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.45, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003660165.1", "gtdb_species": "s__UBA1936 sp003660165", "ani": 100.0, "matched_fragments": 1329, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__UBA1936", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002336985.1", "gtdb_species": "s__UBA1936 sp002336985", "ani": 77.517, "matched_fragments": 190, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__UBA1936", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013821585.1", "gtdb_species": "s__UBA1936 sp013821585", "ani": 77.3449, "matched_fragments": 169, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__UBA1936", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199215.1", "gtdb_species": "s__Sphingobium_A boeckii", "ani": 77.288, "matched_fragments": 194, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003050745.1", "gtdb_species": "s__Sphingomonas sp003050745", "ani": 77.1788, "matched_fragments": 189, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.19", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000786205.1", "gtdb_species": "s__Sphingomonas sp000786205", "ani": 77.17, "matched_fragments": 169, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204695.1", "gtdb_species": "s__Sphingomonas sp001897045", "ani": 77.1672, "matched_fragments": 195, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.82", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_004341085.1", "gtdb_species": "s__Sphingomonas sp004341085", "ani": 77.1562, "matched_fragments": 190, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003590775.1", "gtdb_species": "s__Sphingobium_A sp003590775", "ani": 77.1463, "matched_fragments": 187, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744515.1", "gtdb_species": "s__Rhizorhabdus wittichii_A", "ani": 77.0857, "matched_fragments": 185, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000512205.2", "gtdb_species": "s__Sphingomonas_D sanxanigenens", "ani": 77.0422, "matched_fragments": 211, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004005865.1", "gtdb_species": "s__Rhizorhabdus crocodyli", "ani": 77.029, "matched_fragments": 179, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003515075.1", "gtdb_species": "s__Sphingomonas gilva", "ani": 77.0208, "matched_fragments": 169, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101455.1", "gtdb_species": "s__Rhizorhabdus sp900101455", "ani": 77.0153, "matched_fragments": 156, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016704425.1", "gtdb_species": "s__Chakrabartia sp016704425", "ani": 76.9577, "matched_fragments": 111, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Chakrabartia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_012927105.1", "gtdb_species": "s__Sphingobium psychrophilum", "ani": 76.954, "matched_fragments": 188, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003240625.1", "gtdb_species": "s__Sphingomonas taxi_A", "ani": 76.9335, "matched_fragments": 168, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004340945.1", "gtdb_species": "s__Sphingomonas sp004340945", "ani": 76.8642, "matched_fragments": 191, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.25", "min_intra_species_ani": "95.25", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001724715.1", "gtdb_species": "s__SCN-67-18 sp001724715", "ani": 76.6862, "matched_fragments": 165, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__SCN-67-18", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003240855.1", "gtdb_species": "s__Sphingomonas_L sanxanigenens_A", "ani": 76.6635, "matched_fragments": 166, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011057975.1", "gtdb_species": "s__Sphingomonas sp011057975", "ani": 76.6579, "matched_fragments": 166, "total_fragments": 1330, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }