{ "type": "genome", "identifier": "GCF_003660455.1", "organism": "Nocardioides ferulae", "title": "Nocardioides ferulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003660455.1", "bioproject": "PRJNA224116", "biosample": "SAMN10089085", "wgs_master": "QZVR00000000.1", "refseq_category": "reference genome", "taxid": "2340821", "species_taxid": "2340821", "organism_name": "Nocardioides ferulae", "infraspecific_name": "strain=SZ4R5S7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/15", "asm_name": "ASM366045v1", "asm_submitter": "Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003660455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/660/455/GCF_003660455.1_ASM366045v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4752232", "genome_size_ungapped": "4752232", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003660455.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4527", "protein_coding_gene_count": "4452", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-15", "dateModified": "2018-10-15", "datePublished": "2018-10-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides ferulae" ], "sample_taxid": [ "2340821" ], "sample_host_organism": [ "Ferula songarica" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang" ], "sample_host_location_id": [], "data_size": "1.256 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4752232", "Number of Sequences": "68", "Longest Sequences (bp)": "647468", "N50 (bp)": "245747", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "4486", "Average Protein Length": "322.0", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, 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{ "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 81.9264, "matched_fragments": 824, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 81.7572, "matched_fragments": 863, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 81.6179, "matched_fragments": 790, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 81.5915, "matched_fragments": 854, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.5267, "matched_fragments": 929, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 81.5127, "matched_fragments": 922, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides perillae", "strain": "strain=DSM 24552", "accession": "GCA_013409425.1", "taxid": 1119534, "species_taxid": 1119534, "relation_to_type": "type", "validated": true, "ani": 81.302, "matched_fragments": 730, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 81.0886, "matched_fragments": 789, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.9728, "matched_fragments": 666, "total_fragments": 1554, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, 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