{ "type": "genome", "identifier": "GCF_003663885.1", "organism": "Litoreibacter meonggei", "title": "Litoreibacter meonggei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003663885.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421843", "wgs_master": "RCCE00000000.1", "refseq_category": "reference genome", "taxid": "1049199", "species_taxid": "1049199", "organism_name": "Litoreibacter meonggei", "infraspecific_name": "strain=DSM 29466", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/15", "asm_name": "ASM366388v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003663885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/663/885/GCF_003663885.1_ASM366388v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3949755", "genome_size_ungapped": "3949755", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003663885.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3930", "protein_coding_gene_count": "3869", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-15", "dateModified": "2018-10-15", "datePublished": "2018-10-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Litoreibacter meonggei" ], "sample_taxid": [ "1049199" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.122 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3949755", "Number of Sequences": "16", "Longest Sequences (bp)": "950320", "N50 (bp)": "705113", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.5", "Number of CDSs": "3901", "Average Protein Length": "306.1", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litoreibacter meonggei", "strain": "strain=DSM 29466", "accession": "GCA_003663885.1", "taxid": 1049199, "species_taxid": 1049199, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1308, "total_fragments": 1309, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Litoreibacter ascidiaceicola", "strain": "strain=DSM 100566", "accession": "GCA_900129235.1", "taxid": 1486859, "species_taxid": 1486859, "relation_to_type": "type", "validated": true, "ani": 86.9803, "matched_fragments": 836, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter halocynthiae", "strain": "strain=DSM 29467", "accession": "GCA_004365635.1", "taxid": 1242689, "species_taxid": 1242689, "relation_to_type": "type", "validated": true, "ani": 86.3636, "matched_fragments": 862, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter arenae", "strain": "strain=DSM 19593", "accession": "GCA_000442275.2", "taxid": 491388, "species_taxid": 491388, "relation_to_type": "type", "validated": true, "ani": 83.1423, "matched_fragments": 728, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter janthinus", "strain": "strain=DSM 26921", "accession": "GCA_900111945.1", "taxid": 670154, "species_taxid": 670154, "relation_to_type": "type", "validated": true, "ani": 81.2765, "matched_fragments": 737, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter albidus", "strain": "strain=DSM 26922", "accession": "GCA_900107015.1", "taxid": 670155, "species_taxid": 670155, "relation_to_type": "type", "validated": true, "ani": 80.9853, "matched_fragments": 684, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litoreibacter ponti", "strain": "strain=DSM 100977", "accession": "GCA_003054285.1", "taxid": 1510457, "species_taxid": 1510457, "relation_to_type": "type", "validated": true, "ani": 78.9568, "matched_fragments": 544, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia marina", "strain": "strain=CECT 7688", "accession": "GCA_001458175.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 77.2858, "matched_fragments": 141, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 77.2038, "matched_fragments": 161, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 77.2004, "matched_fragments": 205, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 77.1876, "matched_fragments": 190, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=CECT 7645", "accession": "GCA_001258055.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 77.1444, "matched_fragments": 189, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=CECT 7645", "accession": "GCA_001404195.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 77.1444, "matched_fragments": 189, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phaeobacter italicus", "strain": "strain=DSM 26436", "accession": "GCA_900113345.1", "taxid": 481446, "species_taxid": 481446, "relation_to_type": "type", "validated": true, "ani": 77.0277, "matched_fragments": 192, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.9866, "matched_fragments": 192, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.7393, "matched_fragments": 169, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 76.5854, "matched_fragments": 159, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 76.4739, "matched_fragments": 171, "total_fragments": 1309, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003663885.1", "gtdb_species": "s__Litoreibacter meonggei", "ani": 100.0, "matched_fragments": 1308, "total_fragments": 1309, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Litoreibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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"optimum_ph": 7.5, "genome_size": 3949755.0, "gc_content": 60.2, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Litoreibacter", "meonggei" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }