{ "type": "genome", "identifier": "GCF_003663945.1", "organism": "Lacinutrix venerupis", "title": "Lacinutrix venerupis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003663945.1", "bioproject": "PRJNA224116", "biosample": "SAMN07621379", "wgs_master": "RCCH00000000.1", "refseq_category": "na", "taxid": "1486034", "species_taxid": "1486034", "organism_name": "Lacinutrix venerupis", "infraspecific_name": "strain=DSM 28755", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/15", "asm_name": "ASM366394v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003663945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/663/945/GCF_003663945.1_ASM366394v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3123464", "genome_size_ungapped": "3123265", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003663945.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2840", "protein_coding_gene_count": "2782", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-15", "dateModified": "2018-10-15", "datePublished": "2018-10-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Lacinutrix venerupis" ], "sample_taxid": [ "1486034" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.856 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3123464", "Number of Sequences": "19", "Longest Sequences (bp)": "588401", "N50 (bp)": "352831", "Gap Ratio (%)": "0.006371", "GCcontent (%)": "30.4", "Number of CDSs": "2797", "Average Protein Length": "336.9", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacinutrix algicola", "strain": "strain=AKS293", "accession": "GCA_001418085.1", "taxid": 342954, "species_taxid": 342954, "relation_to_type": "type", "validated": true, "ani": 81.7663, "matched_fragments": 708, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix mariniflava", "strain": "strain=AKS432", "accession": "GCA_001418015.1", "taxid": 342955, "species_taxid": 342955, "relation_to_type": "type", "validated": true, "ani": 81.5537, "matched_fragments": 720, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix jangbogonensis", "strain": "strain=PAMC 27137", "accession": "GCA_000797445.1", "taxid": 1469557, "species_taxid": 1469557, "relation_to_type": "type", "validated": true, "ani": 80.9589, "matched_fragments": 621, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya marilimosa", "strain": "strain=CAM030", "accession": "GCA_000518485.1", "taxid": 272164, "species_taxid": 272164, "relation_to_type": "type", "validated": true, "ani": 79.6414, "matched_fragments": 474, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 79.246, "matched_fragments": 455, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 79.1071, "matched_fragments": 440, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 79.1047, "matched_fragments": 432, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacinutrix himadriensis", "strain": "strain=E4-9a", "accession": "GCA_001418105.1", "taxid": 641549, "species_taxid": 641549, "relation_to_type": "type", "validated": true, "ani": 79.0111, "matched_fragments": 466, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens", "strain": "strain=DSM 18436", "accession": "GCA_000422365.1", "taxid": 393060, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 78.9585, "matched_fragments": 431, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya namhaensis", "strain": "strain=DSM 28881", "accession": "GCA_900114005.1", "taxid": 1144750, "species_taxid": 1144750, "relation_to_type": "type", "validated": true, "ani": 78.9192, "matched_fragments": 461, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.4056, "matched_fragments": 343, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 78.3628, "matched_fragments": 348, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 78.2059, "matched_fragments": 336, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanihabitans sediminis", "strain": "strain=S9-10", "accession": "GCA_003337215.1", "taxid": 1812012, "species_taxid": 1812012, "relation_to_type": "type", "validated": true, "ani": 78.1574, "matched_fragments": 319, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia paragorgiae", "strain": "strain=DSM 23842", "accession": "GCA_900107625.1", "taxid": 283786, "species_taxid": 283786, "relation_to_type": "type", "validated": true, "ani": 78.071, "matched_fragments": 332, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 77.554, "matched_fragments": 243, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.46, "matched_fragments": 214, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.4545, "matched_fragments": 243, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.4004, "matched_fragments": 245, "total_fragments": 1032, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.9782, 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