{ "type": "genome", "identifier": "GCF_003664125.1", "organism": "Planococcus citreus", "title": "Planococcus citreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003664125.1", "bioproject": "PRJNA224116", "biosample": "SAMN09074769", "wgs_master": "RCCP00000000.1", "refseq_category": "reference genome", "taxid": "1373", "species_taxid": "1373", "organism_name": "Planococcus citreus", "infraspecific_name": "strain=DSM 20549", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/15", "asm_name": "ASM366412v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003664125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/664/125/GCF_003664125.1_ASM366412v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3429284", "genome_size_ungapped": "3428939", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003664125.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "3468", "protein_coding_gene_count": "3378", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-15", "dateModified": "2018-10-15", "datePublished": "2018-10-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus citreus" ], "sample_taxid": [ "1373" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.973 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3429284", "Number of Sequences": "13", "Longest Sequences (bp)": "1653421", "N50 (bp)": "411183", "Gap Ratio (%)": "0.010060", "GCcontent (%)": "48.6", "Number of CDSs": "3442", "Average Protein Length": "290.6", "Coding Ratio (%)": "87.5", "Number of rRNAs": "5", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_003664125.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1137, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus citreus", "strain": "strain=DSM 20549", "accession": "GCA_004761885.1", "taxid": 1373, "species_taxid": 1373, "relation_to_type": "type", "validated": true, "ani": 99.8794, "matched_fragments": 1070, "total_fragments": 1137, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus rifietoensis", "strain": "strain=M8", "accession": "GCA_001465795.2", "taxid": 200991, "species_taxid": 200991, "relation_to_type": "type", "validated": true, "ani": 93.0721, "matched_fragments": 1007, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus maitriensis", "strain": "strain=S1", "accession": "GCA_003289925.1", "taxid": 221799, "species_taxid": 221799, "relation_to_type": "type", "validated": true, "ani": 90.1348, "matched_fragments": 941, "total_fragments": 1137, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus plakortidis", 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