{
    "type": "genome",
    "identifier": "GCF_003666165.1",
    "organism": "Brenneria salicis ATCC 15712 = DSM 30166",
    "title": "Brenneria salicis ATCC 15712 = DSM 30166",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bangor University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003666165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05733149",
        "wgs_master": "MJMA00000000.1",
        "refseq_category": "na",
        "taxid": "714314",
        "species_taxid": "55214",
        "organism_name": "Brenneria salicis ATCC 15712 = DSM 30166",
        "infraspecific_name": "strain=DSM 30166",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/17",
        "asm_name": "ASM366616v1",
        "asm_submitter": "Bangor University",
        "gbrs_paired_asm": "GCA_003666165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/666/165/GCF_003666165.1_ASM366616v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3927655",
        "genome_size_ungapped": "3927655",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "102",
        "contig_count": "102",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003666165.1-RS_2024_08_06",
        "annotation_date": "2024-08-06",
        "total_gene_count": "3785",
        "protein_coding_gene_count": "3399",
        "non_coding_gene_count": "72",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-17",
    "dateModified": "2018-10-17",
    "datePublished": "2018-10-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brenneria salicis ATCC 15712 = DSM 30166"
        ],
        "sample_taxid": [
            "714314"
        ],
        "sample_host_organism": [
            "Salix alba"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.120 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3927655",
        "Number of Sequences": "102",
        "Longest Sequences (bp)": "318009",
        "N50 (bp)": "85701",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.1",
        "Number of CDSs": "3626",
        "Average Protein Length": "308.6",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "8",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Brenneria salicis",
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                "taxid": 55214,
                "species_taxid": 55214,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1257,
                "total_fragments": 1262,
                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_012932875.1",
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                "relation_to_type": "type",
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                "ani": 99.998,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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            },
            {
                "organism_name": "Brenneria roseae subsp. americana",
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                "taxid": 1508507,
                "species_taxid": 1509241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria roseae subsp. roseae",
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                "relation_to_type": "type",
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                "ani": 85.7005,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria alni",
                "strain": "strain=NCPPB 3934",
                "accession": "GCA_003666245.1",
                "taxid": 71656,
                "species_taxid": 71656,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pectobacterium colocasium",
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                "accession": "GCA_020181655.1",
                "taxid": 2878098,
                "species_taxid": 2878098,
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                "matched_fragments": 673,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
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                "species_taxid": 2774015,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7299,
                "matched_fragments": 373,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
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                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5982,
                "matched_fragments": 387,
                "total_fragments": 1262,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bonaserana",
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                "accession": "GCA_019049675.1",
                "taxid": 2816248,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1806,
                "matched_fragments": 340,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_003315515.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Brenneria",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Brenneria",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Brenneria",
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                "num_clustered_genomes": 21,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "ATCC",
        "15712",
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        "30166"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}