{
    "type": "genome",
    "identifier": "GCF_003666235.1",
    "organism": "Brenneria goodwinii",
    "title": "Brenneria goodwinii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bangor University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003666235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05732419",
        "wgs_master": "MJLX00000000.1",
        "refseq_category": "na",
        "taxid": "1109412",
        "species_taxid": "1109412",
        "organism_name": "Brenneria goodwinii",
        "infraspecific_name": "strain=FRB141",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/17",
        "asm_name": "ASM366623v1",
        "asm_submitter": "Bangor University",
        "gbrs_paired_asm": "GCA_003666235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/666/235/GCF_003666235.1_ASM366623v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5281024",
        "genome_size_ungapped": "5281024",
        "gc_percent": "53.000000",
        "replicon_count": "0",
        "scaffold_count": "184",
        "contig_count": "184",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003666235.1-RS_2024_09_20",
        "annotation_date": "2024-09-20",
        "total_gene_count": "4775",
        "protein_coding_gene_count": "4590",
        "non_coding_gene_count": "93",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-17",
    "dateModified": "2018-10-17",
    "datePublished": "2018-10-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brenneria goodwinii"
        ],
        "sample_taxid": [
            "1109412"
        ],
        "sample_host_organism": [
            "Quercus robur"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "United Kingdom: Outwood"
        ],
        "sample_host_location_id": [],
        "data_size": "1.506 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5281024",
        "Number of Sequences": "184",
        "Longest Sequences (bp)": "218276",
        "N50 (bp)": "61230",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "4621",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "84.3",
        "Number of rRNAs": "8",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Brenneria goodwinii",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "conclusive"
            },
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            {
                "organism_name": "Brenneria izadpanahii",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria alni",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_005484965.1",
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                "species_taxid": 55210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9321,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria nigrifluens",
                "strain": "strain=LMG 2694",
                "accession": "GCA_003115835.1",
                "taxid": 55210,
                "species_taxid": 55210,
                "relation_to_type": "type",
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                "ani": 83.9202,
                "matched_fragments": 1011,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria roseae subsp. roseae",
                "strain": "strain=LMG 27714",
                "accession": "GCA_003115845.1",
                "taxid": 1508506,
                "species_taxid": 1509241,
                "relation_to_type": "type",
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                "ani": 82.6192,
                "matched_fragments": 889,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria roseae subsp. americana",
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                "accession": "GCA_003115815.1",
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                "validated": true,
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                "matched_fragments": 901,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium quasiaquaticum",
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                "accession": "GCA_014946775.2",
                "taxid": 2774015,
                "species_taxid": 2774015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3174,
                "matched_fragments": 665,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pectobacterium colocasium",
                "strain": "strain=LJ1",
                "accession": "GCA_020181655.1",
                "taxid": 2878098,
                "species_taxid": 2878098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2832,
                "matched_fragments": 711,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8301,
                "matched_fragments": 431,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
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                "relation_to_type": "type",
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                "ani": 78.6059,
                "matched_fragments": 428,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_002291445.1",
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                "total_fragments": 1671,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Brenneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
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                "mean_intra_species_ani": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}